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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SRGAP3
ENSSSCG00000033624
ENSG00000196220
SLIT-ROBO Rho GTPase activating protein 3
Tissue enhanced
Detected in many
brain:
27.3
SRGN
ENSSSCG00000023374
ENSG00000122862
Serglycin
Tissue enhanced
Detected in many
bone marrow:
75.2
dura mater:
42.3
SRI
ENSSSCG00000015298
ENSG00000075142
Sorcin isoform 2
Tissue enriched
Detected in all
lens:
129.2
SRL
ENSSSCG00000007949
ENSG00000185739
Sarcalumenin
Group enriched
Detected in many
heart:
81.0
skeletal muscle:
100.4
SRP14
ENSSSCG00000004785
ENSG00000140319
Signal recognition particle 14
Low tissue specificity
Detected in all
SRP19
ENSSSCG00000026230
ENSG00000153037
Signal recognition particle 19
Low tissue specificity
Detected in all
SRP54
ENSSSCG00000001955
ENSG00000100883
Signal recognition particle 54
Low tissue specificity
Detected in all
SRP68
ENSSSCG00000017191
ENSG00000167881
Signal recognition particle 68
Low tissue specificity
Detected in all
SRP72
ENSSSCG00000008900
ENSG00000174780
Signal recognition particle 72
Low tissue specificity
Detected in all
SRPK1
ENSSSCG00000001554
ENSG00000096063
SRSF protein kinase 1
Low tissue specificity
Detected in all
SRPK2
ENSSSCG00000026110
ENSG00000135250
SRSF protein kinase 2
Tissue enhanced
Detected in all
testis:
64.4
SRPK3
ENSSSCG00000024676
ENSG00000184343
SRSF protein kinase 3
Tissue enhanced
Detected in many
heart:
23.9
skeletal muscle:
50.0
SRPRA
ENSSSCG00000015227
ENSG00000182934
SRP receptor alpha subunit
Tissue enhanced
Detected in all
male glands:
121.3
SRPRB
ENSSSCG00000011639
ENSG00000144867
SRP receptor beta subunit
Tissue enhanced
Detected in all
male glands:
55.0
SRPX
ENSSSCG00000012234
ENSG00000101955
Sushi repeat containing protein, X-linked
Low tissue specificity
Detected in all
SRPX2
ENSSSCG00000012482
ENSG00000102359
Sushi repeat containing protein, X-linked 2
Tissue enriched
Detected in many
cartilage:
73.6
SRR
ENSSSCG00000039918
ENSG00000167720
Serine racemase
Low tissue specificity
Detected in all
SRRM1
ENSSSCG00000032947
ENSG00000133226
Serine and arginine repetitive matrix 1
Low tissue specificity
Detected in all
SRRM2
ENSSSCG00000023304
ENSG00000167978
Serine/arginine repetitive matrix protein 2
Low tissue specificity
Detected in all
SRRM3
ENSSSCG00000032250
ENSG00000177679
Serine/arginine repetitive matrix 3
Tissue enhanced
Detected in many
adrenal gland:
53.3
brain:
19.6
cervix:
18.5
retina:
25.2
SRRT
ENSSSCG00000024789
ENSG00000087087
Serrate, RNA effector molecule
Low tissue specificity
Detected in all
SRSF1
ENSSSCG00000017626
ENSG00000136450
Serine/arginine-rich splicing factor 1
Low tissue specificity
Detected in all
SRSF10
ENSSSCG00000036293
ENSG00000188529
Serine/arginine-rich splicing factor 10 isoform 1
Low tissue specificity
Detected in all
SRSF11
ENSSSCG00000003791
ENSG00000116754
Serine/arginine-rich splicing factor 11
Low tissue specificity
Detected in all
SRSF12
ENSSSCG00000032781
ENSG00000154548
Serine/arginine-rich splicing factor 12
Tissue enhanced
Detected in all
pineal gland:
31.4
SRSF2
ENSSSCG00000036592
ENSG00000161547
Serine/arginine-rich splicing factor 2
Low tissue specificity
Detected in all
SRSF3
ENSSSCG00000001564
ENSG00000112081
Serine and arginine rich splicing factor 3
Low tissue specificity
Detected in all
SRSF4
ENSSSCG00000003589
ENSG00000116350
Serine/arginine-rich splicing factor 4
Low tissue specificity
Detected in all
SRSF5
ENSSSCG00000032583
ENSG00000100650
Serine and arginine rich splicing factor 5
Low tissue specificity
Detected in all
SRSF6
ENSSSCG00000007362
ENSG00000124193
Serine/arginine-rich splicing factor 6
Low tissue specificity
Detected in all
SRSF9
ENSSSCG00000009906
ENSG00000111786
Serine/arginine-rich splicing factor 9
Low tissue specificity
Detected in all
SRXN1
ENSSSCG00000023298
ENSG00000271303
Sulfiredoxin 1
Tissue enhanced
Detected in many
ovary:
41.0
SS18
ENSSSCG00000003716
ENSG00000141380
Protein SSXT
Low tissue specificity
Detected in all
SS18L1
ENSSSCG00000035448
ENSG00000184402
SS18L1, nBAF chromatin remodeling complex subunit
Low tissue specificity
Detected in all
SS18L2
ENSSSCG00000027711
ENSG00000008324
SS18 like 2
Tissue enhanced
Detected in all
male glands:
50.3
SSB
ENSSSCG00000015938
ENSG00000138385
Sjogren syndrome antigen B
Low tissue specificity
Detected in all
SSBP2
ENSSSCG00000035757
ENSG00000145687
Single stranded DNA binding protein 2
Low tissue specificity
Detected in all
SSBP3
ENSSSCG00000039594
ENSG00000157216
Single stranded DNA binding protein 3
Low tissue specificity
Detected in all
SSBP4
ENSSSCG00000025955
ENSG00000130511
Single stranded DNA binding protein 4
Low tissue specificity
Detected in all
SSC4D
ENSSSCG00000036391
ENSG00000146700
Scavenger receptor cysteine rich family member with 4 domains
Tissue enhanced
Detected in many
lymphoid tissue:
11.4
stomach:
7.6
SSC5D
ENSSSCG00000037450
ENSG00000179954
Scavenger receptor cysteine rich family member with 5 domains
Tissue enhanced
Detected in all
adipose tissue:
52.0
cartilage:
57.7
SSFA2
ENSSSCG00000038730
ENSG00000138434
Sperm specific antigen 2
Low tissue specificity
Detected in all
SSH1
ENSSSCG00000009943
ENSG00000084112
Slingshot protein phosphatase 1
Low tissue specificity
Detected in all
SSH2
ENSSSCG00000017791
ENSG00000141298
Slingshot protein phosphatase 2
Tissue enhanced
Detected in all
skeletal muscle:
56.6
SSH3
ENSSSCG00000027956
ENSG00000172830
Slingshot protein phosphatase 3
Low tissue specificity
Detected in many
SSPN
ENSSSCG00000025531
ENSG00000123096
Sarcospan
Tissue enhanced
Detected in many
smooth muscle:
47.9
SSR1
ENSSSCG00000001022
ENSG00000124783
Signal sequence receptor, alpha
Low tissue specificity
Detected in all
SSR2
ENSSSCG00000006501
ENSG00000163479
Signal sequence receptor subunit 2
Low tissue specificity
Detected in all
SSR3
ENSSSCG00000030567
ENSG00000114850
Translocon-associated protein subunit gamma
Low tissue specificity
Detected in all
SSR4
ENSSSCG00000012784
ENSG00000180879
Signal sequence receptor subunit 4
Tissue enhanced
Detected in all
male glands:
127.4
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