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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SNAPC1
ENSSSCG00000005097
ENSG00000023608
Small nuclear RNA activating complex polypeptide 1
Low tissue specificity
Detected in all
SNAPC2
ENSSSCG00000013589
ENSG00000104976
Small nuclear RNA activating complex polypeptide 2
Low tissue specificity
Detected in all
SNAPC4
ENSSSCG00000038262
ENSG00000165684
Small nuclear RNA activating complex polypeptide 4
Low tissue specificity
Detected in all
SNAPC5
ENSSSCG00000038941
ENSG00000174446
SnRNA-activating protein complex subunit 5
Low tissue specificity
Detected in all
SNAPIN
ENSSSCG00000034159
ENSG00000143553
SNARE-associated protein Snapin
Low tissue specificity
Detected in all
SNCAIP
ENSSSCG00000014235
ENSG00000064692
Synphilin-1 isoform 1a
Low tissue specificity
Detected in many
SND1
ENSSSCG00000016590
ENSG00000197157
Staphylococcal nuclease and tudor domain containing 1
Low tissue specificity
Detected in all
SNED1
ENSSSCG00000016381
ENSG00000162804
Sushi, nidogen and EGF like domains 1
Tissue enhanced
Detected in many
cartilage:
74.6
synovial tissue:
37.6
SNF8
ENSSSCG00000021461
ENSG00000159210
SNF8, ESCRT-II complex subunit
Low tissue specificity
Detected in all
SNIP1
ENSSSCG00000029991
ENSG00000163877
Smad nuclear interacting protein 1
Low tissue specificity
Detected in all
SNN
ENSSSCG00000007897
ENSG00000184602
Stannin
Tissue enhanced
Detected in all
brain:
58.5
lens:
50.1
SNPH
ENSSSCG00000039392
ENSG00000101298
Syntaphilin
Tissue enhanced
Detected in many
brain:
23.9
male glands:
18.0
SNRK
ENSSSCG00000011295
ENSG00000163788
SNF related kinase
Low tissue specificity
Detected in all
SNRNP200
ENSSSCG00000008127
ENSG00000144028
Small nuclear ribonucleoprotein U5 subunit 200
Low tissue specificity
Detected in all
SNRNP25
ENSSSCG00000007962
ENSG00000161981
Small nuclear ribonucleoprotein U11/U12 subunit 25
Low tissue specificity
Detected in all
SNRNP27
ENSSSCG00000025674
ENSG00000124380
Small nuclear ribonucleoprotein U4/U6.U5 subunit 27
Low tissue specificity
Detected in all
SNRNP35
ENSSSCG00000022212
ENSG00000184209
Small nuclear ribonucleoprotein U11/U12 subunit 35
Low tissue specificity
Detected in all
SNRNP40
ENSSSCG00000003596
ENSG00000060688
Small nuclear ribonucleoprotein U5 subunit 40
Low tissue specificity
Detected in all
SNRPA
ENSSSCG00000002998
ENSG00000077312
U1 small nuclear ribonucleoprotein A
Low tissue specificity
Detected in all
SNRPA1
ENSSSCG00000005786
ENSG00000131876
Small nuclear ribonucleoprotein polypeptide A'
Low tissue specificity
Detected in all
SNRPB2
ENSSSCG00000037602
ENSG00000125870
U2 small nuclear ribonucleoprotein B''
Low tissue specificity
Detected in all
SNRPC
ENSSSCG00000001531
ENSG00000124562
U1 small nuclear ribonucleoprotein C
Tissue enhanced
Detected in all
testis:
91.4
SNRPD1
ENSSSCG00000003701
ENSG00000167088
Small nuclear ribonucleoprotein D1 polypeptide
Low tissue specificity
Detected in all
SNRPD2
ENSSSCG00000033500
ENSG00000125743
Small nuclear ribonucleoprotein Sm D2
Low tissue specificity
Detected in all
SNRPD3
ENSSSCG00000010058
ENSG00000100028
Small nuclear ribonucleoprotein Sm D3
Low tissue specificity
Detected in all
SNRPE
ENSSSCG00000023562
ENSG00000182004
Small nuclear ribonucleoprotein E
Low tissue specificity
Detected in all
SNRPF
ENSSSCG00000000895
ENSG00000139343
Small nuclear ribonucleoprotein F
Low tissue specificity
Detected in all
SNRPN
ENSSSCG00000028124
ENSG00000128739
Small nuclear ribonucleoprotein-associated protein N
Tissue enhanced
Detected in many
brain:
75.1
lens:
52.1
SNTB1
ENSSSCG00000005994
ENSG00000172164
Syntrophin beta 1
Tissue enhanced
Detected in many
choroid plexus:
68.3
lens:
77.2
SNTB2
ENSSSCG00000028109
ENSG00000168807
Syntrophin beta 2
Low tissue specificity
Detected in all
SNU13
ENSSSCG00000000058
NHP2-like protein 1
Tissue enhanced
Detected in all
brain:
79.2
SNUPN
ENSSSCG00000001877
ENSG00000169371
Snurportin 1
Low tissue specificity
Detected in all
SNW1
ENSSSCG00000022932
ENSG00000100603
SNW domain containing 1
Low tissue specificity
Detected in all
SNX10
ENSSSCG00000037598
ENSG00000086300
Sorting nexin 10
Tissue enhanced
Detected in many
brain:
32.5
epididymis:
20.9
pineal gland:
25.2
SNX11
ENSSSCG00000017528
ENSG00000002919
Sorting nexin 11
Low tissue specificity
Detected in all
SNX12
ENSSSCG00000012400
ENSG00000147164
Sorting nexin 12
Low tissue specificity
Detected in all
SNX13
ENSSSCG00000024761
ENSG00000071189
Sorting nexin 13
Low tissue specificity
Detected in all
SNX14
ENSSSCG00000004293
ENSG00000135317
Sorting nexin 14
Low tissue specificity
Detected in all
SNX15
ENSSSCG00000013012
ENSG00000110025
Sorting nexin 15
Low tissue specificity
Detected in all
SNX16
ENSSSCG00000006151
ENSG00000104497
Sorting nexin 16
Low tissue specificity
Detected in all
SNX17
ENSSSCG00000025363
ENSG00000115234
Sorting nexin 17
Low tissue specificity
Detected in all
SNX18
ENSSSCG00000031337
ENSG00000178996
Sorting nexin 18
Low tissue specificity
Detected in all
SNX19
ENSSSCG00000015252
ENSG00000120451
Sorting nexin 19
Low tissue specificity
Detected in all
SNX2
ENSSSCG00000022790
ENSG00000205302
Sorting nexin 2
Low tissue specificity
Detected in all
SNX20
ENSSSCG00000025741
ENSG00000167208
Sorting nexin 20
Tissue enhanced
Detected in many
lymphoid tissue:
14.6
SNX21
ENSSSCG00000007425
ENSG00000124104
Sorting nexin family member 21
Low tissue specificity
Detected in all
SNX22
ENSSSCG00000037275
ENSG00000157734
Sorting nexin 22
Group enriched
Detected in many
brain:
30.6
lens:
8.0
male glands:
24.2
thyroid gland:
25.0
SNX24
ENSSSCG00000039373
ENSG00000064652
Sorting nexin 24
Tissue enhanced
Detected in all
lens:
54.5
SNX25
ENSSSCG00000015789
ENSG00000109762
Sorting nexin 25
Tissue enhanced
Detected in all
thyroid gland:
45.1
SNX27
ENSSSCG00000006619
ENSG00000143376
Sorting nexin family member 27
Low tissue specificity
Detected in all
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