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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SH2B2
ENSSSCG00000007682
ENSG00000160999
SH2B adaptor protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
33.6
SH2B3
ENSSSCG00000009833
ENSG00000111252
SH2B adaptor protein 3
Low tissue specificity
Detected in all
SH2D1A
ENSSSCG00000012643
ENSG00000183918
SH2 domain-containing protein 1A
Tissue enriched
Detected in all
lymphoid tissue:
73.7
SH2D1B
ENSSSCG00000032108
ENSG00000198574
SH2 domain containing 1B
Tissue enhanced
Detected in all
male glands:
29.3
SH2D2A
ENSSSCG00000006466
ENSG00000027869
SH2 domain containing 2A
Low tissue specificity
Detected in all
SH2D3A
ENSSSCG00000022380
ENSG00000125731
SH2 domain containing 3A
Tissue enhanced
Detected in many
stomach:
21.7
SH2D3C
ENSSSCG00000005620
ENSG00000095370
SH2 domain containing 3C
Low tissue specificity
Detected in many
SH2D4A
ENSSSCG00000033750
ENSG00000104611
SH2 domain containing 4A
Tissue enhanced
Detected in many
stomach:
28.6
SH2D6
ENSSSCG00000008240
ENSG00000152292
SH2 domain containing 6
Tissue enhanced
Detected in many
epididymis:
97.4
vagus nerve:
45.8
SH2D7
ENSSSCG00000001764
ENSG00000183476
SH2 domain containing 7
Tissue enhanced
Detected in many
brain:
27.7
SH3BGR
ENSSSCG00000029219
ENSG00000185437
SH3 domain-binding glutamic acid-rich protein
Tissue enhanced
Detected in many
heart:
42.7
skeletal muscle:
85.0
smooth muscle:
46.7
SH3BGRL
ENSSSCG00000012452
ENSG00000131171
SH3 domain binding glutamate rich protein like
Low tissue specificity
Detected in all
SH3BGRL2
ENSSSCG00000032015
ENSG00000198478
SH3 domain binding glutamate rich protein like 2
Tissue enhanced
Detected in many
large intestine:
64.3
lens:
119.2
SH3BGRL3
ENSSSCG00000034937
ENSG00000142669
SH3 domain binding glutamate rich protein like 3
Low tissue specificity
Detected in all
SH3BP2
ENSSSCG00000022004
ENSG00000087266
SH3 domain binding protein 2
Low tissue specificity
Detected in many
SH3BP4
ENSSSCG00000034692
ENSG00000130147
SH3 domain binding protein 4
Low tissue specificity
Detected in all
SH3BP5
ENSSSCG00000024938
ENSG00000131370
SH3 domain binding protein 5
Low tissue specificity
Detected in all
SH3BP5L
ENSSSCG00000025900
ENSG00000175137
SH3 binding domain protein 5 like
Low tissue specificity
Detected in all
SH3D19
ENSSSCG00000009018
ENSG00000109686
SH3 domain containing 19
Low tissue specificity
Detected in many
SH3GL1
ENSSSCG00000013508
ENSG00000141985
SH3 domain containing GRB2 like 1, endophilin A2
Low tissue specificity
Detected in all
SH3GLB1
ENSSSCG00000006930
ENSG00000097033
Endophilin-B1
Low tissue specificity
Detected in all
SH3GLB2
ENSSSCG00000005668
ENSG00000148341
SH3 domain containing GRB2 like, endophilin B2
Low tissue specificity
Detected in all
SH3KBP1
ENSSSCG00000012160
ENSG00000147010
SH3 domain containing kinase binding protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
54.5
SH3PXD2A
ENSSSCG00000010604
ENSG00000107957
SH3 and PX domains 2A
Low tissue specificity
Detected in many
SH3PXD2B
ENSSSCG00000027378
ENSG00000174705
SH3 and PX domains 2B
Low tissue specificity
Detected in all
SH3RF1
ENSSSCG00000009716
ENSG00000154447
SH3 domain containing ring finger 1
Tissue enhanced
Detected in all
cartilage:
85.0
SH3RF2
ENSSSCG00000014410
ENSG00000156463
SH3 domain containing ring finger 2
Tissue enhanced
Detected in many
skin:
72.0
SH3TC2
ENSSSCG00000023279
ENSG00000169247
SH3 domain and tetratricopeptide repeats 2
Tissue enhanced
Detected in many
brain:
24.0
vagus nerve:
47.3
SH3YL1
ENSSSCG00000023273
ENSG00000035115
SH3 domain-containing YSC84-like protein 1
Tissue enhanced
Detected in many
male glands:
53.6
SHANK2
ENSSSCG00000033043
ENSG00000162105
SH3 and multiple ankyrin repeat domains 2
Tissue enhanced
Detected in many
male glands:
66.4
salivary gland:
69.2
SHANK3
ENSSSCG00000031925
ENSG00000251322
SH3 and multiple ankyrin repeat domains 3
Low tissue specificity
Detected in all
SHARPIN
ENSSSCG00000005914
ENSG00000179526
SHANK associated RH domain interactor
Low tissue specificity
Detected in all
SHAS2
ENSSSCG00000005992
ENSG00000170961
Hyaluronan synthase 2
Tissue enhanced
Detected in all
ovary:
33.1
SHC1
ENSSSCG00000006539
ENSG00000160691
SHC adaptor protein 1
Low tissue specificity
Detected in all
SHC2
ENSSSCG00000040083
ENSG00000129946
SHC adaptor protein 2
Tissue enhanced
Detected in many
brain:
15.8
cervix:
15.0
SHC3
ENSSSCG00000039841
ENSG00000148082
SHC adaptor protein 3
Tissue enhanced
Detected in many
brain:
28.0
SHE
ENSSSCG00000006547
ENSG00000169291
Src homology 2 domain containing E
Low tissue specificity
Detected in many
SHISA2
ENSSSCG00000030113
ENSG00000180730
Shisa family member 2
Tissue enhanced
Detected in many
cartilage:
90.7
male glands:
23.3
skeletal muscle:
26.0
SHISA4
ENSSSCG00000031981
ENSG00000198892
Shisa family member 4
Tissue enhanced
Detected in many
brain:
43.2
skeletal muscle:
124.2
SHISA5
ENSSSCG00000011357
ENSG00000164054
Shisa family member 5
Tissue enhanced
Detected in all
adrenal gland:
86.1
SHISA8
ENSSSCG00000035755
ENSG00000234965
Shisa family member 8
Tissue enriched
Detected in many
vagus nerve:
85.6
SHISAL1
ENSSSCG00000039522
ENSG00000138944
Shisa like 1
Tissue enhanced
Detected in many
brain:
31.9
SHISAL2B
ENSSSCG00000024514
ENSG00000145642
Shisa like 2B
Tissue enhanced
Detected in many
brain:
24.9
skin:
12.0
SHKBP1
ENSSSCG00000033836
ENSG00000160410
SH3KBP1 binding protein 1
Low tissue specificity
Detected in all
SHMT2
ENSSSCG00000037077
ENSG00000182199
Serine hydroxymethyltransferase 2
Tissue enhanced
Detected in all
cartilage:
56.8
SHOC2
ENSSSCG00000010628
ENSG00000108061
SHOC2, leucine rich repeat scaffold protein
Low tissue specificity
Detected in all
SHOX2
ENSSSCG00000025238
ENSG00000168779
Short stature homeobox protein 2
Tissue enhanced
Detected in many
bone marrow:
18.6
synovial tissue:
45.8
SHPRH
ENSSSCG00000004120
ENSG00000146414
SNF2 histone linker PHD RING helicase
Low tissue specificity
Detected in all
SHQ1
ENSSSCG00000011518
ENSG00000144736
SHQ1, H/ACA ribonucleoprotein assembly factor
Low tissue specificity
Detected in all
SHROOM1
ENSSSCG00000014287
ENSG00000164403
Shroom family member 1
Low tissue specificity
Detected in all
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