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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Cancers
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Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RPUSD3
ENSSSCG00000011555
ENSG00000156990
RNA pseudouridylate synthase domain containing 3
Low tissue specificity
Detected in all
RPUSD4
ENSSSCG00000015233
ENSG00000165526
RNA pseudouridylate synthase domain-containing protein 4
Low tissue specificity
Detected in all
RRAD
ENSSSCG00000036060
ENSG00000166592
RRAD, Ras related glycolysis inhibitor and calcium channel regulator
Group enriched
Detected in many
heart:
65.8
skeletal muscle:
23.4
RRAGA
ENSSSCG00000005174
ENSG00000155876
Ras related GTP binding A
Low tissue specificity
Detected in all
RRAGB
ENSSSCG00000037228
ENSG00000083750
Ras related GTP binding B
Low tissue specificity
Detected in all
RRAGC
ENSSSCG00000003648
ENSG00000116954
C-Myc-binding protein
Low tissue specificity
Detected in all
RRAGD
ENSSSCG00000004318
ENSG00000025039
Ras-related GTP-binding protein D
Tissue enhanced
Detected in many
male glands:
34.4
RRAS
ENSSSCG00000003183
ENSG00000126458
RAS related
Tissue enhanced
Detected in all
smooth muscle:
113.4
RRBP1
ENSSSCG00000024692
ENSG00000125844
Ribosome binding protein 1
Tissue enhanced
Detected in all
epididymis:
76.3
RREB1
ENSSSCG00000001021
ENSG00000124782
Ras responsive element binding protein 1
Low tissue specificity
Detected in all
RRH
ENSSSCG00000009136
ENSG00000180245
Retinal pigment epithelium-derived rhodopsin homolog
Low tissue specificity
Detected in all
RRM1
ENSSSCG00000014791
ENSG00000167325
Ribonucleotide reductase catalytic subunit M1
Low tissue specificity
Detected in all
RRM2B
ENSSSCG00000036139
ENSG00000048392
Ribonucleotide reductase regulatory TP53 inducible subunit M2B
Low tissue specificity
Detected in all
RRN3
ENSSSCG00000033356
ENSG00000085721
RRN3 homolog, RNA polymerase I transcription factor
Low tissue specificity
Detected in all
RRNAD1
ENSSSCG00000006470
ENSG00000143303
Protein RRNAD1
Low tissue specificity
Detected in all
RRP1
ENSSSCG00000037061
ENSG00000160214
Ribosomal RNA processing 1
Low tissue specificity
Detected in all
RRP12
ENSSSCG00000010514
ENSG00000052749
Ribosomal RNA processing 12 homolog
Low tissue specificity
Detected in all
RRP15
ENSSSCG00000027846
ENSG00000067533
Ribosomal RNA processing 15 homolog
Low tissue specificity
Detected in all
RRP1B
ENSSSCG00000021698
ENSG00000160208
Ribosomal RNA processing 1B
Tissue enhanced
Detected in all
testis:
54.1
RRP36
ENSSSCG00000001656
ENSG00000124541
Ribosomal RNA processing protein 36 homolog
Low tissue specificity
Detected in all
RRP7A
ENSSSCG00000033983
ENSG00000189306
Ribosomal RNA processing 7 homolog A
Low tissue specificity
Detected in all
RRP8
ENSSSCG00000023880
ENSG00000132275
Ribosomal RNA processing 8
Low tissue specificity
Detected in all
RRP9
ENSSSCG00000023177
ENSG00000114767
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein
Low tissue specificity
Detected in all
RRS1
ENSSSCG00000006214
ENSG00000179041
Ribosome biogenesis regulator homolog
Low tissue specificity
Detected in all
RSAD1
ENSSSCG00000017567
ENSG00000136444
Radical S-adenosyl methionine domain containing 1
Low tissue specificity
Detected in many
RSAD2
ENSSSCG00000008648
ENSG00000134321
Radical S-adenosyl methionine domain-containing protein 2
Tissue enhanced
Detected in many
small intestine:
50.0
RSBN1
ENSSSCG00000030154
ENSG00000081019
Round spermatid basic protein 1
Low tissue specificity
Detected in all
RSBN1L
ENSSSCG00000038977
ENSG00000187257
Round spermatid basic protein 1 like
Low tissue specificity
Detected in all
RSC1A1
ENSSSCG00000003461
ENSG00000215695
Regulatory solute carrier protein family 1 member 1
Tissue enhanced
Detected in all
liver:
77.9
RSF1
ENSSSCG00000014882
ENSG00000048649
Remodeling and spacing factor 1
Low tissue specificity
Detected in all
RSG1
ENSSSCG00000003473
ENSG00000132881
REM2 and RAB like small GTPase 1
Tissue enhanced
Detected in many
choroid plexus:
15.0
lens:
18.4
RSL1D1
ENSSSCG00000023984
ENSG00000171490
Ribosomal L1 domain containing 1
Low tissue specificity
Detected in all
RSPH1
ENSSSCG00000040224
ENSG00000160188
Radial spoke head 1 homolog
Low tissue specificity
Detected in all
RSPH3
ENSSSCG00000004055
ENSG00000130363
Radial spoke head 3 homolog
Low tissue specificity
Detected in all
RSPH9
ENSSSCG00000001691
ENSG00000172426
Radial spoke head 9 homolog
Tissue enhanced
Detected in many
testis:
31.1
RSPO2
ENSSSCG00000006034
ENSG00000147655
R-spondin-2 precursor
Tissue enhanced
Detected in many
brain:
21.1
gallbladder:
17.4
synovial tissue:
11.3
upper respiratory system:
13.7
RSPO3
ENSSSCG00000004218
ENSG00000146374
R-spondin-3 precursor
Tissue enhanced
Detected in many
ductus deferens:
44.6
dura mater:
45.6
RSPO4
ENSSSCG00000007197
ENSG00000101282
R-spondin 4
Tissue enriched
Detected in some
synovial tissue:
33.8
RSPRY1
ENSSSCG00000002820
ENSG00000159579
Ring finger and SPRY domain containing 1
Low tissue specificity
Detected in all
RSRC1
ENSSSCG00000027556
ENSG00000174891
Arginine and serine rich coiled-coil 1
Low tissue specificity
Detected in all
RSRC2
ENSSSCG00000009791
ENSG00000111011
Arginine and serine rich coiled-coil 2
Low tissue specificity
Detected in all
RSRP1
ENSSSCG00000034449
ENSG00000117616
Arginine/serine-rich protein 1
Low tissue specificity
Detected in all
RTCA
ENSSSCG00000006865
ENSG00000137996
RNA 3'-terminal phosphate cyclase
Tissue enhanced
Detected in all
lens:
49.9
RTCB
ENSSSCG00000000158
ENSG00000100220
TRNA-splicing ligase RtcB homolog
Low tissue specificity
Detected in all
RTF1
ENSSSCG00000004747
ENSG00000137815
RTF1 homolog, Paf1/RNA polymerase II complex component
Low tissue specificity
Detected in all
RTF2
ENSSSCG00000007496
ENSG00000022277
Protein RTF2 homolog
Low tissue specificity
Detected in all
RTKN
ENSSSCG00000008281
ENSG00000114993
Rhotekin
Tissue enhanced
Detected in many
brain:
53.4
vagus nerve:
52.5
RTKN2
ENSSSCG00000039707
ENSG00000182010
Rhotekin 2
Tissue enhanced
Detected in many
lung:
27.1
lymphoid tissue:
22.1
testis:
13.9
RTL5
ENSSSCG00000020876
ENSG00000242732
Retrotransposon Gag like 5
Group enriched
Detected in many
ductus deferens:
69.6
epididymis:
127.0
male glands:
72.3
RTL6
ENSSSCG00000000022
ENSG00000188636
Retrotransposon Gag like 6
Low tissue specificity
Detected in all
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