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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Other congenital disorders
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RIOX2
ENSSSCG00000034501
ENSG00000170854
Ribosomal oxygenase 2
Low tissue specificity
Detected in all
RIPK1
ENSSSCG00000001009
ENSG00000137275
Receptor interacting serine/threonine kinase 1
Low tissue specificity
Detected in all
RIPK2
ENSSSCG00000024096
ENSG00000104312
Receptor interacting serine/threonine kinase 2
Low tissue specificity
Detected in all
RIPK3
ENSSSCG00000001987
ENSG00000129465
Receptor interacting serine/threonine kinase 3
Low tissue specificity
Detected in many
RIPK4
ENSSSCG00000012083
ENSG00000183421
Receptor interacting serine/threonine kinase 4
Tissue enhanced
Detected in all
cornea:
27.1
RIPOR1
ENSSSCG00000002774
ENSG00000039523
RHO family interacting cell polarization regulator 1
Tissue enhanced
Detected in all
lymphoid tissue:
76.6
RIPOR2
ENSSSCG00000001097
ENSG00000111913
RHO family interacting cell polarization regulator 2
Tissue enhanced
Detected in many
lymphoid tissue:
61.4
RIPOR3
ENSSSCG00000007470
ENSG00000042062
RIPOR family member 3
Tissue enhanced
Detected in many
epididymis:
21.1
RIPPLY1
ENSSSCG00000033276
ENSG00000147223
Ripply transcriptional repressor 1
Tissue enriched
Detected in many
epididymis:
65.9
RIT1
ENSSSCG00000023991
ENSG00000143622
GTP-binding protein Rit1
Low tissue specificity
Detected in all
RITA1
ENSSSCG00000034479
ENSG00000139405
RBPJ interacting and tubulin associated 1
Low tissue specificity
Detected in all
RLBP1
ENSSSCG00000001836
ENSG00000140522
Retinaldehyde binding protein 1
Tissue enhanced
Detected in all
brain:
29.0
retina:
67.7
RLF
ENSSSCG00000003670
ENSG00000117000
Rearranged L-myc fusion
Low tissue specificity
Detected in all
RLIM
ENSSSCG00000028538
ENSG00000131263
Ring finger protein, LIM domain interacting
Low tissue specificity
Detected in all
RMC1
ENSSSCG00000026851
ENSG00000141452
Regulator of MON1-CCZ1
Low tissue specificity
Detected in all
RMDN1
ENSSSCG00000006136
ENSG00000176623
Regulator of microtubule dynamics 1
Low tissue specificity
Detected in all
RMDN3
ENSSSCG00000004765
ENSG00000137824
Regulator of microtubule dynamics 3
Low tissue specificity
Detected in all
RMI1
ENSSSCG00000039950
ENSG00000178966
RecQ mediated genome instability 1
Low tissue specificity
Detected in all
RMND1
ENSSSCG00000004089
ENSG00000155906
Required for meiotic nuclear division 1 homolog
Tissue enhanced
Detected in all
lens:
36.1
RMND5A
ENSSSCG00000035478
ENSG00000153561
Required for meiotic nuclear division 5 homolog A
Low tissue specificity
Detected in all
RMND5B
ENSSSCG00000014033
ENSG00000145916
Protein RMD5 homolog B
Low tissue specificity
Detected in all
RNASE13
ENSSSCG00000023519
ENSG00000206150
Ribonuclease A family member 13 (inactive)
Tissue enriched
Detected in some
epididymis:
83.0
RNASEH2A
ENSSSCG00000013737
ENSG00000104889
Ribonuclease H2 subunit A
Low tissue specificity
Detected in all
RNASEH2B
ENSSSCG00000024385
ENSG00000136104
Ribonuclease H2 subunit B
Tissue enriched
Detected in all
lymphoid tissue:
109.6
RNASEH2C
ENSSSCG00000012979
ENSG00000172922
Ribonuclease H2 subunit C
Low tissue specificity
Detected in all
RNASEK
ENSSSCG00000017929
ENSG00000219200
Ribonuclease K
Tissue enhanced
Detected in all
pineal gland:
94.3
RNASEL
ENSSSCG00000015549
ENSG00000135828
2-5A-dependent ribonuclease
Low tissue specificity
Detected in all
RND1
ENSSSCG00000038562
ENSG00000172602
Rho family GTPase 1
Low tissue specificity
Detected in all
RND2
ENSSSCG00000029460
ENSG00000108830
Rho family GTPase 2
Tissue enriched
Detected in all
brain:
38.0
RND3
ENSSSCG00000040445
ENSG00000115963
Rho-related GTP-binding protein RhoE precursor
Low tissue specificity
Detected in all
RNF10
ENSSSCG00000009910
ENSG00000022840
Ring finger protein 10
Low tissue specificity
Detected in all
RNF103
ENSSSCG00000008218
ENSG00000239305
Ring finger protein 103
Low tissue specificity
Detected in all
RNF11
ENSSSCG00000031172
ENSG00000123091
Ring finger protein 11
Low tissue specificity
Detected in all
RNF111
ENSSSCG00000004589
ENSG00000157450
Ring finger protein 111
Low tissue specificity
Detected in all
RNF112
ENSSSCG00000034609
ENSG00000128482
Ring finger protein 112
Tissue enhanced
Detected in all
brain:
18.2
RNF114
ENSSSCG00000036129
E3 ubiquitin-protein ligase RNF114
Low tissue specificity
Detected in all
RNF115
ENSSSCG00000037355
ENSG00000265491
Ring finger protein 115
Low tissue specificity
Detected in all
RNF121
ENSSSCG00000014800
ENSG00000137522
Ring finger protein 121
Low tissue specificity
Detected in all
RNF122
ENSSSCG00000036062
ENSG00000133874
Ring finger protein 122
Low tissue specificity
Detected in all
RNF123
ENSSSCG00000011387
ENSG00000164068
Ring finger protein 123
Low tissue specificity
Detected in all
RNF125
ENSSSCG00000003729
ENSG00000101695
Ring finger protein 125
Low tissue specificity
Detected in all
RNF126
ENSSSCG00000039551
ENSG00000070423
Ring finger protein 126
Low tissue specificity
Detected in all
RNF128
ENSSSCG00000012551
ENSG00000133135
Ring finger protein 128, E3 ubiquitin protein ligase
Tissue enhanced
Detected in many
brain:
45.6
pineal gland:
28.0
RNF13
ENSSSCG00000027459
ENSG00000082996
Ring finger protein 13
Tissue enhanced
Detected in all
brain:
76.9
RNF135
ENSSSCG00000017737
ENSG00000181481
Ring finger protein 135
Low tissue specificity
Detected in all
RNF138
ENSSSCG00000003730
ENSG00000134758
Ring finger protein 138
Tissue enhanced
Detected in all
testis:
58.7
RNF139
ENSSSCG00000024412
ENSG00000170881
Ring finger protein 139
Low tissue specificity
Detected in all
RNF14
ENSSSCG00000014394
ENSG00000013561
Ring finger protein 14
Low tissue specificity
Detected in all
RNF141
ENSSSCG00000036546
ENSG00000110315
RING finger protein 141
Tissue enhanced
Detected in all
lens:
62.1
RNF144A
ENSSSCG00000008646
ENSG00000151692
Ring finger protein 144A
Tissue enhanced
Detected in all
adrenal gland:
79.0
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