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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PROX1
ENSSSCG00000015584
ENSG00000117707
Prospero homeobox protein 1
Group enriched
Detected in many
lens:
191.6
liver:
61.8
PRPF19
ENSSSCG00000013107
ENSG00000110107
Pre-mRNA-processing factor 19
Low tissue specificity
Detected in all
PRPF3
ENSSSCG00000030119
ENSG00000117360
U4/U6 small nuclear ribonucleoprotein Prp3
Low tissue specificity
Detected in all
PRPF31
ENSSSCG00000003263
ENSG00000105618
Pre-mRNA processing factor 31
Low tissue specificity
Detected in all
PRPF38A
ENSSSCG00000028288
ENSG00000134748
Pre-mRNA processing factor 38A
Low tissue specificity
Detected in all
PRPF39
ENSSSCG00000004997
ENSG00000185246
Pre-mRNA processing factor 39
Low tissue specificity
Detected in all
PRPF4
ENSSSCG00000024648
ENSG00000136875
Pre-mRNA processing factor 4
Low tissue specificity
Detected in all
PRPF40A
ENSSSCG00000015867
ENSG00000196504
Pre-mRNA-processing factor 40 homolog A
Low tissue specificity
Detected in all
PRPF40B
ENSSSCG00000000204
ENSG00000110844
Pre-mRNA processing factor 40 homolog B
Low tissue specificity
Detected in all
PRPF4B
ENSSSCG00000001002
ENSG00000112739
Pre-mRNA processing factor 4B
Low tissue specificity
Detected in all
PRPF6
ENSSSCG00000029119
ENSG00000101161
Pre-mRNA processing factor 6
Low tissue specificity
Detected in all
PRPF8
ENSSSCG00000017817
ENSG00000174231
Pre-mRNA processing factor 8
Low tissue specificity
Detected in all
PRPH
ENSSSCG00000000195
ENSG00000135406
Peripherin
Tissue enriched
Detected in many
brain:
87.3
PRPS2
ENSSSCG00000012116
ENSG00000101911
Ribose-phosphate pyrophosphokinase 2
Tissue enriched
Detected in all
male glands:
139.6
PRPSAP1
ENSSSCG00000017184
ENSG00000161542
Phosphoribosyl pyrophosphate synthetase associated protein 1
Tissue enhanced
Detected in all
male glands:
48.8
testis:
47.7
PRR11
ENSSSCG00000024145
ENSG00000068489
Proline rich 11
Tissue enhanced
Detected in all
lymphoid tissue:
30.7
PRR12
ENSSSCG00000032668
ENSG00000126464
Proline rich 12
Low tissue specificity
Detected in all
PRR14
ENSSSCG00000007790
ENSG00000156858
Proline rich 14
Low tissue specificity
Detected in all
PRR14L
ENSSSCG00000010033
ENSG00000183530
Proline rich 14 like
Low tissue specificity
Detected in all
PRR15
ENSSSCG00000016686
ENSG00000176532
Proline rich 15
Tissue enriched
Detected in many
male glands:
87.3
PRR15L
ENSSSCG00000024743
ENSG00000167183
Proline rich 15 like
Tissue enhanced
Detected in many
large intestine:
88.9
male glands:
109.6
PRR16
ENSSSCG00000039760
ENSG00000184838
Proline rich 16
Tissue enhanced
Detected in many
adrenal gland:
54.5
pineal gland:
30.3
PRR19
ENSSSCG00000003024
ENSG00000188368
Proline rich 19
Low tissue specificity
Detected in all
PRR22
ENSSSCG00000036793
ENSG00000212123
Proline rich 22
Low tissue specificity
Detected in many
PRR3
ENSSSCG00000025892
ENSG00000204576
Proline rich 3
Low tissue specificity
Detected in all
PRR32
ENSSSCG00000012647
ENSG00000183631
Proline rich 32
Tissue enriched
Detected in some
mouth:
16.9
PRR5
ENSSSCG00000021748
ENSG00000186654
Proline-rich protein 5
Tissue enriched
Detected in many
lens:
105.4
PRR5L
ENSSSCG00000013292
ENSG00000135362
Proline rich 5 like
Tissue enhanced
Detected in many
adipose tissue:
32.8
brain:
35.0
PRR7
ENSSSCG00000040698
ENSG00000131188
Proline rich 7, synaptic
Tissue enriched
Detected in many
lens:
53.2
PRRC1
ENSSSCG00000014252
ENSG00000164244
Proline rich coiled-coil 1
Tissue enhanced
Detected in all
male glands:
62.7
PRRC2A
ENSSSCG00000001409
ENSG00000204469
Protein PRRC2A
Low tissue specificity
Detected in all
PRRC2B
ENSSSCG00000005715
ENSG00000130723
Proline rich coiled-coil 2B
Low tissue specificity
Detected in all
PRRC2C
ENSSSCG00000015480
ENSG00000117523
Proline rich coiled-coil 2C
Low tissue specificity
Detected in all
PRRG1
ENSSSCG00000027777
ENSG00000130962
Proline rich and Gla domain 1
Tissue enhanced
Detected in all
brain:
47.4
vagus nerve:
33.3
PRRG2
ENSSSCG00000003161
ENSG00000126460
Proline rich and Gla domain 2
Tissue enhanced
Detected in many
male glands:
39.6
PRRG3
ENSSSCG00000026254
ENSG00000130032
Proline rich and Gla domain 3
Tissue enriched
Detected in many
vagus nerve:
62.4
PRRG4
ENSSSCG00000013313
ENSG00000135378
Transmembrane gamma-carboxyglutamic acid protein 4 precursor
Low tissue specificity
Detected in all
PRRT1
ENSSSCG00000024403
ENSG00000204314
Proline-rich transmembrane protein 1
Tissue enhanced
Detected in many
brain:
47.7
thyroid gland:
44.6
PRRT1B
ENSSSCG00000031465
ENSG00000283526
Proline rich transmembrane protein 1B
Tissue enhanced
Detected in all
kidney:
28.2
PRRT3
ENSSSCG00000011561
ENSG00000163704
Proline rich transmembrane protein 3
Tissue enhanced
Detected in all
brain:
18.1
pituitary gland:
16.0
PRRX1
ENSSSCG00000031503
ENSG00000116132
Paired related homeobox 1
Tissue enhanced
Detected in many
cervix:
63.8
dura mater:
70.7
PRRX2
ENSSSCG00000005680
ENSG00000167157
Paired related homeobox 2
Tissue enhanced
Detected in many
mesothelial tissue:
34.2
PRSS12
ENSSSCG00000009114
ENSG00000164099
Serine protease 12
Tissue enhanced
Detected in all
choroid plexus:
55.3
PRSS16
ENSSSCG00000025410
ENSG00000112812
Serine protease 16
Tissue enriched
Detected in all
lymphoid tissue:
113.9
PRSS22
ENSSSCG00000035594
ENSG00000005001
Serine protease 22
Tissue enriched
Detected in all
male glands:
44.5
PRSS23
ENSSSCG00000014921
ENSG00000150687
Serine protease 23
Tissue enhanced
Detected in all
ovary:
56.4
PRSS35
ENSSSCG00000004452
ENSG00000146250
Serine protease 35
Tissue enhanced
Detected in many
cartilage:
24.8
synovial tissue:
83.6
PRSS36
ENSSSCG00000007760
ENSG00000178226
Serine protease 36
Tissue enriched
Detected in many
upper respiratory system:
22.8
PRSS48
ENSSSCG00000009017
ENSG00000189099
Serine protease 48
Tissue enhanced
Detected in many
choroid plexus:
43.9
PRSS53
ENSSSCG00000007765
ENSG00000151006
Serine protease 53
Low tissue specificity
Detected in all
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