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Gene name
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
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8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PLXNA3
ENSSSCG00000023483
ENSG00000130827
Plexin A3
Low tissue specificity
Detected in all
PLXNA4
ENSSSCG00000021562
ENSG00000221866
Plexin A4
Tissue enhanced
Detected in many
brain:
30.1
penis:
32.8
PLXNB1
ENSSSCG00000011346
ENSG00000164050
Plexin B1
Low tissue specificity
Detected in all
PLXNB2
ENSSSCG00000035733
ENSG00000196576
Plexin B2
Low tissue specificity
Detected in all
PLXNC1
ENSSSCG00000000907
ENSG00000136040
Plexin C1
Tissue enhanced
Detected in many
cervix:
35.6
lymphoid tissue:
45.6
PLXND1
ENSSSCG00000011592
ENSG00000004399
Plexin D1
Low tissue specificity
Detected in many
PM20D2
ENSSSCG00000004314
ENSG00000146281
Peptidase M20 domain containing 2
Low tissue specificity
Detected in all
PMAIP1
ENSSSCG00000026454
Phorbol-12-myristate-13-acetate-induced protein 1
Low tissue specificity
Detected in many
PMEPA1
ENSSSCG00000034259
ENSG00000124225
Protein TMEPAI
Tissue enhanced
Detected in many
cartilage:
70.3
PMF1
ENSSSCG00000006493
ENSG00000160783
Polyamine-modulated factor 1
Tissue enriched
Detected in many
bone marrow:
42.4
PML
ENSSSCG00000001912
ENSG00000140464
Promyelocytic leukemia
Low tissue specificity
Detected in all
PMM1
ENSSSCG00000000061
ENSG00000100417
Phosphomannomutase 1
Tissue enhanced
Detected in all
kidney:
67.1
retina:
55.4
PMP22
ENSSSCG00000037832
ENSG00000109099
Peripheral myelin protein 22
Tissue enhanced
Detected in many
brain:
106.6
vagus nerve:
291.1
PMPCA
ENSSSCG00000031413
ENSG00000165688
Peptidase, mitochondrial processing alpha subunit
Low tissue specificity
Detected in all
PMPCB
ENSSSCG00000015422
ENSG00000105819
Peptidase, mitochondrial processing beta subunit
Low tissue specificity
Detected in all
PMS1
ENSSSCG00000016045
ENSG00000064933
PMS1 homolog 1, mismatch repair system component
Low tissue specificity
Detected in all
PMS2
ENSSSCG00000007590
ENSG00000122512
PMS1 homolog 2, mismatch repair system component
Low tissue specificity
Detected in all
PMVK
ENSSSCG00000006535
ENSG00000163344
Phosphomevalonate kinase
Tissue enhanced
Detected in all
liver:
33.5
PNISR
ENSSSCG00000037594
ENSG00000132424
Arginine/serine-rich protein PNISR
Low tissue specificity
Detected in all
PNKD
ENSSSCG00000029002
ENSG00000127838
Paroxysmal nonkinesigenic dyskinesia
Low tissue specificity
Detected in all
PNKP
ENSSSCG00000003195
ENSG00000039650
Polynucleotide kinase 3'-phosphatase
Low tissue specificity
Detected in all
PNMA1
ENSSSCG00000002346
ENSG00000176903
PNMA family member 1
Tissue enhanced
Detected in all
brain:
29.6
pituitary gland:
32.1
PNMA8C
ENSSSCG00000031469
ENSG00000277531
PNMA family member 8C
Tissue enhanced
Detected in many
brain:
6.2
epididymis:
13.1
PNMT
ENSSSCG00000017501
ENSG00000141744
Phenylethanolamine N-methyltransferase
Tissue enriched
Detected in some
adrenal gland:
75.1
PNN
ENSSSCG00000022828
ENSG00000100941
Pinin
Low tissue specificity
Detected in all
PNOC
ENSSSCG00000032600
ENSG00000168081
Nociceptin precursor
Low tissue specificity
Detected in all
PNP
ENSSSCG00000002135
ENSG00000198805
Purine nucleoside phosphorylase
Low tissue specificity
Detected in many
PNPLA2
ENSSSCG00000012841
ENSG00000177666
Patatin-like phospholipase domain-containing protein 2
Tissue enhanced
Detected in all
adipose tissue:
136.1
PNPLA6
ENSSSCG00000013572
ENSG00000032444
Patatin like phospholipase domain containing 6
Low tissue specificity
Detected in all
PNPLA7
ENSSSCG00000034978
ENSG00000130653
Patatin like phospholipase domain containing 7
Low tissue specificity
Detected in all
PNPLA8
ENSSSCG00000015446
ENSG00000135241
Patatin like phospholipase domain containing 8
Low tissue specificity
Detected in all
PNPO
ENSSSCG00000032782
ENSG00000108439
Pyridoxamine 5'-phosphate oxidase
Low tissue specificity
Detected in all
PNPT1
ENSSSCG00000031882
ENSG00000138035
Polyribonucleotide nucleotidyltransferase 1, mitochondrial
Low tissue specificity
Detected in all
PNRC1
ENSSSCG00000039953
ENSG00000146278
Proline rich nuclear receptor coactivator 1
Low tissue specificity
Detected in all
PNRC2
ENSSSCG00000023326
ENSG00000189266
Proline-rich nuclear receptor coactivator 2
Low tissue specificity
Detected in all
POC1A
ENSSSCG00000011426
ENSG00000164087
POC1 centriolar protein A
Tissue enhanced
Detected in many
testis:
28.5
POC1B
ENSSSCG00000000920
ENSG00000139323
POC1 centriolar protein B
Low tissue specificity
Detected in all
POC5
ENSSSCG00000014084
ENSG00000152359
POC5 centriolar protein
Low tissue specificity
Detected in all
PODNL1
ENSSSCG00000013762
ENSG00000132000
Podocan like 1
Tissue enhanced
Detected in many
cartilage:
24.7
vagus nerve:
31.8
PODXL2
ENSSSCG00000021397
ENSG00000114631
Podocalyxin like 2
Tissue enhanced
Detected in many
brain:
24.9
pineal gland:
18.5
POFUT1
ENSSSCG00000007244
ENSG00000101346
GDP-fucose protein O-fucosyltransferase 1 precursor
Low tissue specificity
Detected in all
POFUT2
ENSSSCG00000012088
ENSG00000186866
Protein O-fucosyltransferase 2
Low tissue specificity
Detected in all
POGK
ENSSSCG00000006319
ENSG00000143157
Pogo transposable element with KRAB domain
Low tissue specificity
Detected in all
POGLUT1
ENSSSCG00000032313
ENSG00000163389
Protein O-glucosyltransferase 1
Low tissue specificity
Detected in all
POGZ
ENSSSCG00000006622
ENSG00000143442
Pogo transposable element derived with ZNF domain
Low tissue specificity
Detected in all
POLA1
ENSSSCG00000022240
ENSG00000101868
DNA polymerase alpha 1, catalytic subunit
Low tissue specificity
Detected in all
POLA2
ENSSSCG00000012997
ENSG00000014138
DNA polymerase alpha 2, accessory subunit
Low tissue specificity
Detected in all
POLD1
ENSSSCG00000003216
ENSG00000062822
DNA polymerase delta 1, catalytic subunit
Low tissue specificity
Detected in all
POLD2
ENSSSCG00000016753
ENSG00000106628
DNA polymerase delta subunit 2
Low tissue specificity
Detected in all
POLD3
ENSSSCG00000027506
ENSG00000077514
DNA polymerase delta subunit 3
Low tissue specificity
Detected in all
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