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Chromosome
1
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PIK3CA
ENSSSCG00000030413
ENSG00000121879
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
Low tissue specificity
Detected in all
PIK3CB
ENSSSCG00000021203
ENSG00000051382
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
Tissue enhanced
Detected in all
lens:
43.0
PIK3CD
ENSSSCG00000003395
ENSG00000171608
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
Tissue enhanced
Detected in all
lymphoid tissue:
41.1
stomach:
40.1
PIK3CG
ENSSSCG00000027272
ENSG00000105851
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
Tissue enhanced
Detected in many
lymphoid tissue:
27.6
PIK3IP1
ENSSSCG00000010026
ENSG00000100100
Phosphoinositide-3-kinase interacting protein 1
Low tissue specificity
Detected in all
PIK3R1
ENSSSCG00000016958
ENSG00000145675
Phosphoinositide-3-kinase regulatory subunit 1
Low tissue specificity
Detected in all
PIK3R3
ENSSSCG00000003909
ENSG00000117461
Phosphoinositide-3-kinase regulatory subunit 3
Tissue enhanced
Detected in all
brain:
52.5
PIK3R4
ENSSSCG00000029094
ENSG00000196455
Phosphoinositide-3-kinase regulatory subunit 4
Low tissue specificity
Detected in all
PIK3R5
ENSSSCG00000017991
ENSG00000141506
Phosphoinositide 3-kinase regulatory subunit 5
Tissue enhanced
Detected in many
lymphoid tissue:
43.2
stomach:
27.3
PIK3R6
ENSSSCG00000017990
ENSG00000276231
Phosphoinositide-3-kinase regulatory subunit 6
Low tissue specificity
Detected in all
PIKFYVE
ENSSSCG00000016147
ENSG00000115020
Phosphoinositide kinase, FYVE-type zinc finger containing
Low tissue specificity
Detected in all
PIM1
ENSSSCG00000001573
ENSG00000137193
Pim-1 proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
PIM2
ENSSSCG00000028964
ENSG00000102096
Pim-2 proto-oncogene, serine/threonine kinase
Tissue enhanced
Detected in all
ovary:
31.1
PIM3
ENSSSCG00000032936
ENSG00000198355
Pim-3 proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
PIMREG
ENSSSCG00000017893
ENSG00000129195
PICALM interacting mitotic regulator
Tissue enhanced
Detected in many
adrenal gland:
13.7
male glands:
14.0
mouth:
12.8
PIN1
ENSSSCG00000039619
ENSG00000127445
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Low tissue specificity
Detected in all
PIN4
ENSSSCG00000023312
ENSG00000102309
Peptidylprolyl cis/trans isomerase, NIMA-interacting 4
Low tissue specificity
Detected in all
PINK1
ENSSSCG00000003506
ENSG00000158828
PTEN induced putative kinase 1
Low tissue specificity
Detected in all
PIP4K2A
ENSSSCG00000011079
ENSG00000150867
Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha
Tissue enhanced
Detected in all
brain:
67.9
lymphoid tissue:
35.5
PIP4K2B
ENSSSCG00000033291
ENSG00000276293
Phosphatidylinositol-5-phosphate 4-kinase type 2 beta
Tissue enhanced
Detected in all
brain:
29.6
PIP4P1
ENSSSCG00000038172
ENSG00000165782
Phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1
Low tissue specificity
Detected in all
PIP4P2
ENSSSCG00000006121
ENSG00000155099
Phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
Tissue enhanced
Detected in many
brain:
16.8
PIP5K1A
ENSSSCG00000030547
ENSG00000143398
Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha
Low tissue specificity
Detected in all
PIP5K1C
ENSSSCG00000013490
ENSG00000186111
Phosphatidylinositol-4-phosphate 5-kinase type 1 gamma
Tissue enhanced
Detected in all
brain:
50.9
PIP5KL1
ENSSSCG00000005629
ENSG00000167103
Phosphatidylinositol-4-phosphate 5-kinase like 1
Tissue enhanced
Detected in many
brain:
6.7
cartilage:
7.9
PIR
ENSSSCG00000012136
ENSG00000087842
Pirin
Tissue enhanced
Detected in all
lens:
47.8
PISD
ENSSSCG00000010032
ENSG00000241878
Phosphatidylserine decarboxylase proenzyme, mitochondrial
Tissue enhanced
Detected in all
epididymis:
86.6
PITHD1
ENSSSCG00000023495
ENSG00000057757
PITH domain containing 1
Tissue enhanced
Detected in all
lens:
61.1
PITPNA
ENSSSCG00000025248
ENSG00000174238
Phosphatidylinositol transfer protein alpha
Low tissue specificity
Detected in all
PITPNC1
ENSSSCG00000017274
ENSG00000154217
Cytoplasmic phosphatidylinositol transfer protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
103.0
PITPNM1
ENSSSCG00000012903
ENSG00000110697
Phosphatidylinositol transfer protein membrane associated 1
Low tissue specificity
Detected in all
PITPNM2
ENSSSCG00000009781
ENSG00000090975
Phosphatidylinositol transfer protein membrane associated 2
Low tissue specificity
Detected in all
PITPNM3
ENSSSCG00000017892
ENSG00000091622
PITPNM family member 3
Tissue enhanced
Detected in many
adrenal gland:
28.9
male glands:
32.4
retina:
34.6
PITRM1
ENSSSCG00000011157
ENSG00000107959
Pitrilysin metallopeptidase 1
Low tissue specificity
Detected in all
PITX2
ENSSSCG00000034708
ENSG00000164093
Pituitary homeobox 2
Tissue enhanced
Detected in many
cornea:
16.8
large intestine:
18.7
mouth:
13.0
pituitary gland:
35.4
urinary bladder:
12.4
PITX3
ENSSSCG00000010578
ENSG00000107859
Paired like homeodomain 3
Tissue enriched
Detected in some
lens:
102.7
PIWIL4
ENSSSCG00000014959
ENSG00000134627
Piwi-like protein 4
Low tissue specificity
Detected in all
PJA1
ENSSSCG00000024463
ENSG00000181191
Praja ring finger ubiquitin ligase 1
Tissue enhanced
Detected in all
epididymis:
78.8
PJA2
ENSSSCG00000022845
ENSG00000198961
Praja ring finger ubiquitin ligase 2
Tissue enhanced
Detected in all
brain:
57.1
PKD1
ENSSSCG00000008041
ENSG00000008710
Polycystin-1 precursor
Tissue enhanced
Detected in all
cartilage:
58.6
PKD2
ENSSSCG00000009217
ENSG00000118762
Polycystin-2
Low tissue specificity
Detected in all
PKDCC
ENSSSCG00000008468
ENSG00000162878
Protein kinase domain containing, cytoplasmic
Low tissue specificity
Detected in all
PKIA
ENSSSCG00000006163
ENSG00000171033
CAMP-dependent protein kinase inhibitor alpha
Tissue enhanced
Detected in many
brain:
40.7
heart:
51.8
pineal gland:
34.9
skeletal muscle:
41.3
PKIB
ENSSSCG00000004236
ENSG00000135549
CAMP-dependent protein kinase inhibitor beta
Tissue enhanced
Detected in many
brain:
30.0
cornea:
40.2
male glands:
32.0
stomach:
35.0
PKIG
ENSSSCG00000022998
ENSG00000168734
CAMP-dependent protein kinase inhibitor gamma
Low tissue specificity
Detected in all
PKM
ENSSSCG00000001930
ENSG00000067225
Pyruvate kinase M1/2
Tissue enhanced
Detected in all
skeletal muscle:
301.5
PKMYT1
ENSSSCG00000029264
ENSG00000127564
Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
Tissue enriched
Detected in all
testis:
41.6
PKN1
ENSSSCG00000013779
ENSG00000123143
Protein kinase N1
Low tissue specificity
Detected in all
PKN2
ENSSSCG00000006927
ENSG00000065243
Protein kinase N2
Low tissue specificity
Detected in all
PKN3
ENSSSCG00000005657
ENSG00000160447
Protein kinase N3
Tissue enhanced
Detected in many
cartilage:
67.6
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