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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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7
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PEPD
ENSSSCG00000002868
ENSG00000124299
Peptidase D
Tissue enhanced
Detected in all
kidney:
60.2
PER1
ENSSSCG00000017983
ENSG00000179094
Period circadian regulator 1
Tissue enhanced
Detected in all
cartilage:
119.9
PER2
ENSSSCG00000016338
ENSG00000132326
Period circadian regulator 2
Low tissue specificity
Detected in all
PER3
ENSSSCG00000028572
ENSG00000049246
Period circadian regulator 3
Low tissue specificity
Detected in all
PERM1
ENSSSCG00000033735
ENSG00000187642
PPARGC1 and ESRR induced regulator, muscle 1
Tissue enhanced
Detected in some
heart:
53.5
male glands:
22.5
skeletal muscle:
70.3
PES1
ENSSSCG00000010010
ENSG00000100029
Pescadillo homolog
Low tissue specificity
Detected in all
PET100
ENSSSCG00000034876
ENSG00000229833
Protein PET100 homolog, mitochondrial
Tissue enhanced
Detected in all
male glands:
47.1
PEX1
ENSSSCG00000029967
ENSG00000127980
Peroxisomal biogenesis factor 1
Low tissue specificity
Detected in all
PEX10
ENSSSCG00000027916
ENSG00000157911
Peroxisomal biogenesis factor 10
Low tissue specificity
Detected in all
PEX11A
ENSSSCG00000027052
ENSG00000166821
Peroxisomal biogenesis factor 11 alpha
Low tissue specificity
Detected in all
PEX11G
ENSSSCG00000013569
ENSG00000104883
Peroxisomal biogenesis factor 11 gamma
Low tissue specificity
Detected in all
PEX12
ENSSSCG00000017713
ENSG00000108733
Peroxisomal biogenesis factor 12
Low tissue specificity
Detected in all
PEX13
ENSSSCG00000008387
ENSG00000162928
Peroxisomal biogenesis factor 13
Low tissue specificity
Detected in all
PEX14
ENSSSCG00000003405
ENSG00000142655
Peroxisomal biogenesis factor 14
Low tissue specificity
Detected in all
PEX16
ENSSSCG00000013267
ENSG00000121680
Peroxisomal biogenesis factor 16
Low tissue specificity
Detected in all
PEX2
ENSSSCG00000006168
ENSG00000164751
Peroxisome biogenesis factor 2
Low tissue specificity
Detected in all
PEX26
ENSSSCG00000027190
ENSG00000215193
Peroxisomal biogenesis factor 26
Low tissue specificity
Detected in all
PEX3
ENSSSCG00000004134
ENSG00000034693
Peroxisomal biogenesis factor 3
Low tissue specificity
Detected in all
PEX5
ENSSSCG00000025252
ENSG00000139197
Peroxisomal biogenesis factor 5
Low tissue specificity
Detected in all
PEX5L
ENSSSCG00000011766
ENSG00000114757
Peroxisomal biogenesis factor 5 like
Tissue enhanced
Detected in many
brain:
43.0
retina:
16.2
vagus nerve:
21.3
PEX6
ENSSSCG00000001653
ENSG00000124587
Peroxisome biogenesis factor 6
Low tissue specificity
Detected in all
PEX7
ENSSSCG00000004160
ENSG00000112357
Peroxisomal biogenesis factor 7
Low tissue specificity
Detected in all
PFAS
ENSSSCG00000023861
ENSG00000178921
Phosphoribosylformylglycinamidine synthase
Low tissue specificity
Detected in all
PFDN1
ENSSSCG00000038493
ENSG00000113068
Prefoldin subunit 1
Low tissue specificity
Detected in all
PFDN2
ENSSSCG00000006366
ENSG00000143256
Prefoldin subunit 2
Tissue enhanced
Detected in all
lens:
43.0
PFDN4
ENSSSCG00000007487
Prefoldin subunit 4
Low tissue specificity
Detected in all
PFKFB1
ENSSSCG00000024814
ENSG00000158571
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1
Tissue enhanced
Detected in all
liver:
52.2
skeletal muscle:
64.5
PFKFB2
ENSSSCG00000015660
ENSG00000123836
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
Tissue enhanced
Detected in many
mouth:
32.0
skin:
57.4
PFKFB3
ENSSSCG00000011133
ENSG00000170525
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
Tissue enhanced
Detected in many
cartilage:
45.0
kidney:
49.1
skeletal muscle:
57.0
PFKFB4
ENSSSCG00000011353
ENSG00000114268
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
Low tissue specificity
Detected in all
PFKL
ENSSSCG00000028197
ENSG00000141959
Phosphofructokinase, liver type
Low tissue specificity
Detected in all
PFKM
ENSSSCG00000021129
ENSG00000152556
ATP-dependent 6-phosphofructokinase, muscle type
Tissue enhanced
Detected in many
heart:
66.0
skeletal muscle:
163.3
PFKP
ENSSSCG00000011158
ENSG00000067057
Phosphofructokinase, platelet
Low tissue specificity
Detected in many
PFN1
ENSSSCG00000017907
Profilin-1
Low tissue specificity
Detected in all
PFN2
ENSSSCG00000030260
ENSG00000070087
Profilin 2
Tissue enhanced
Detected in all
brain:
94.9
lens:
57.1
PGAM1
ENSSSCG00000010517
ENSG00000171314
Phosphoglycerate mutase 1
Low tissue specificity
Detected in all
PGAM2
ENSSSCG00000016720
ENSG00000164708
Phosphoglycerate mutase 2
Tissue enriched
Detected in some
skeletal muscle:
191.4
PGAM5
ENSSSCG00000035618
ENSG00000247077
PGAM family member 5, mitochondrial serine/threonine protein phosphatase
Low tissue specificity
Detected in all
PGAP1
ENSSSCG00000016073
ENSG00000197121
Post-GPI attachment to proteins 1
Low tissue specificity
Detected in all
PGAP2
ENSSSCG00000035653
ENSG00000148985
Post-GPI attachment to proteins 2
Tissue enhanced
Detected in all
epididymis:
93.7
male glands:
67.6
PGAP3
ENSSSCG00000017502
ENSG00000161395
Post-GPI attachment to proteins 3
Low tissue specificity
Detected in all
PGBD1
ENSSSCG00000001207
ENSG00000137338
PiggyBac transposable element derived 1
Tissue enhanced
Detected in all
brain:
29.1
PGBD2
ENSSSCG00000033305
ENSG00000185220
PiggyBac transposable element derived 2
Low tissue specificity
Detected in many
PGBD5
ENSSSCG00000021027
ENSG00000177614
PiggyBac transposable element derived 5
Tissue enhanced
Detected in many
brain:
31.3
lymphoid tissue:
21.7
PGD
ENSSSCG00000003402
ENSG00000142657
Phosphogluconate dehydrogenase
Low tissue specificity
Detected in all
PGF
ENSSSCG00000002376
ENSG00000119630
Placental growth factor
Tissue enhanced
Detected in many
male glands:
50.9
PGGHG
ENSSSCG00000025023
ENSG00000142102
Protein-glucosylgalactosylhydroxylysine glucosidase
Low tissue specificity
Detected in many
PGGT1B
ENSSSCG00000014215
ENSG00000164219
Protein geranylgeranyltransferase type I subunit beta
Low tissue specificity
Detected in all
PGK1
ENSSSCG00000012440
ENSG00000102144
Phosphoglycerate kinase 1
Tissue enhanced
Detected in all
skeletal muscle:
116.8
PGLS
ENSSSCG00000013878
ENSG00000130313
6-phosphogluconolactonase
Low tissue specificity
Detected in all
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