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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NCOA2
ENSSSCG00000006194
ENSG00000140396
Nuclear receptor coactivator 2
Low tissue specificity
Detected in all
NCOA3
ENSSSCG00000007458
ENSG00000124151
Nuclear receptor coactivator 3
Low tissue specificity
Detected in all
NCOA4
ENSSSCG00000010399
ENSG00000266412
Nuclear receptor coactivator 4
Tissue enriched
Detected in all
male glands:
156.0
NCOA5
ENSSSCG00000007438
ENSG00000124160
Nuclear receptor coactivator 5
Low tissue specificity
Detected in all
NCOA6
ENSSSCG00000007284
ENSG00000198646
Nuclear receptor coactivator 6
Low tissue specificity
Detected in all
NCOA7
ENSSSCG00000004222
ENSG00000111912
Nuclear receptor coactivator 7
Low tissue specificity
Detected in all
NCOR1
ENSSSCG00000018039
ENSG00000141027
Nuclear receptor corepressor 1
Low tissue specificity
Detected in all
NCOR2
ENSSSCG00000009761
ENSG00000196498
Nuclear receptor corepressor 2
Tissue enhanced
Detected in all
cartilage:
116.3
NCS1
ENSSSCG00000039311
ENSG00000107130
Neuronal calcium sensor 1
Tissue enhanced
Detected in many
brain:
59.6
NCSTN
ENSSSCG00000006385
ENSG00000162736
Nicastrin
Low tissue specificity
Detected in all
ND1
ENSSSCG00000018065
ENSG00000198888
NADH dehydrogenase subunit 1 (mitochondrion)
Tissue enhanced
Detected in all
heart:
1382.7
ND2
ENSSSCG00000018069
ENSG00000198763
NADH-ubiquinone oxidoreductase chain 2
Tissue enhanced
Detected in all
heart:
888.1
ND3
ENSSSCG00000018084
ENSG00000198840
NADH-ubiquinone oxidoreductase chain 3
Tissue enhanced
Detected in all
heart:
1339.5
ND4
ENSSSCG00000018087
ENSG00000198886
NADH-ubiquinone oxidoreductase chain 4
Tissue enhanced
Detected in all
heart:
1220.5
ND4L
ENSSSCG00000018086
ENSG00000212907
NADH-ubiquinone oxidoreductase chain 4L
Tissue enhanced
Detected in all
heart:
1287.2
ND5
ENSSSCG00000018091
ENSG00000198786
NADH-ubiquinone oxidoreductase chain 5
Tissue enhanced
Detected in all
heart:
1058.0
ND6
ENSSSCG00000018092
ENSG00000198695
NADH-ubiquinone oxidoreductase chain 6
Tissue enhanced
Detected in all
heart:
887.1
NDC1
ENSSSCG00000028748
ENSG00000058804
NDC1 transmembrane nucleoporin
Low tissue specificity
Detected in all
NDC80
ENSSSCG00000003697
ENSG00000080986
NDC80, kinetochore complex component
Low tissue specificity
Detected in all
NDE1
ENSSSCG00000040479
ENSG00000072864
NudE neurodevelopment protein 1
Low tissue specificity
Detected in all
NDEL1
ENSSSCG00000017986
ENSG00000166579
Nuclear distribution protein nudE-like 1
Low tissue specificity
Detected in all
NDFIP1
ENSSSCG00000025295
ENSG00000131507
NEDD4 family-interacting protein 1 precursor
Tissue enhanced
Detected in all
brain:
74.5
NDFIP2
ENSSSCG00000009480
ENSG00000102471
Nedd4 family interacting protein 2
Tissue enhanced
Detected in all
brain:
45.1
NDN
ENSSSCG00000004834
ENSG00000182636
Necdin
Tissue enhanced
Detected in all
brain:
40.5
NDNF
ENSSSCG00000029260
ENSG00000173376
Neuron derived neurotrophic factor
Tissue enhanced
Detected in many
choroid plexus:
43.3
NDOR1
ENSSSCG00000005859
ENSG00000188566
NADPH dependent diflavin oxidoreductase 1
Low tissue specificity
Detected in all
NDP
ENSSSCG00000029656
ENSG00000124479
Norrin precursor
Tissue enhanced
Detected in many
brain:
31.8
pineal gland:
14.7
NDRG1
ENSSSCG00000005944
ENSG00000104419
N-myc downstream regulated 1
Tissue enhanced
Detected in all
lens:
209.7
NDRG2
ENSSSCG00000030309
ENSG00000165795
Protein NDRG2
Tissue enhanced
Detected in many
brain:
98.4
NDRG4
ENSSSCG00000021911
ENSG00000103034
NDRG family member 4
Tissue enhanced
Detected in many
brain:
86.8
cervix:
82.2
NDST1
ENSSSCG00000032731
ENSG00000070614
N-deacetylase and N-sulfotransferase 1
Low tissue specificity
Detected in all
NDST3
ENSSSCG00000009115
ENSG00000164100
N-deacetylase and N-sulfotransferase 3
Tissue enhanced
Detected in all
brain:
28.1
thyroid gland:
26.9
NDUFA10
ENSSSCG00000016349
ENSG00000130414
NADH:ubiquinone oxidoreductase subunit A10
Low tissue specificity
Detected in all
NDUFA11
ENSSSCG00000027307
NADH dehydrogenase
Low tissue specificity
Detected in all
NDUFA13
ENSSSCG00000013936
ENSG00000186010
NADH dehydrogenase
Tissue enhanced
Detected in all
testis:
78.2
NDUFA4L2
ENSSSCG00000027621
ENSG00000185633
NADH dehydrogenase
Tissue enriched
Detected in many
cartilage:
82.0
NDUFA6
ENSSSCG00000000045
ENSG00000184983
NADH dehydrogenase
Low tissue specificity
Detected in all
NDUFA8
ENSSSCG00000005528
ENSG00000119421
NADH dehydrogenase
Tissue enhanced
Detected in all
pineal gland:
49.0
NDUFAF1
ENSSSCG00000004748
ENSG00000137806
NADH:ubiquinone oxidoreductase complex assembly factor 1
Low tissue specificity
Detected in all
NDUFAF2
ENSSSCG00000027763
ENSG00000164182
NADH:ubiquinone oxidoreductase complex assembly factor 2
Low tissue specificity
Detected in all
NDUFAF3
ENSSSCG00000011371
ENSG00000178057
NADH dehydrogenase
Low tissue specificity
Detected in all
NDUFAF5
ENSSSCG00000007076
ENSG00000101247
NADH:ubiquinone oxidoreductase complex assembly factor 5
Tissue enhanced
Detected in all
testis:
22.7
NDUFAF6
ENSSSCG00000006093
ENSG00000156170
NADH:ubiquinone oxidoreductase complex assembly factor 6
Low tissue specificity
Detected in all
NDUFAF7
ENSSSCG00000008494
ENSG00000003509
NADH:ubiquinone oxidoreductase complex assembly factor 7
Low tissue specificity
Detected in all
NDUFB10
ENSSSCG00000030328
ENSG00000140990
NADH:ubiquinone oxidoreductase subunit B10
Low tissue specificity
Detected in all
NDUFB11
ENSSSCG00000034487
ENSG00000147123
NADH:ubiquinone oxidoreductase subunit B11
Low tissue specificity
Detected in all
NDUFB2
ENSSSCG00000032390
ENSG00000090266
NADH dehydrogenase
Low tissue specificity
Detected in all
NDUFB7
ENSSSCG00000013778
ENSG00000099795
NADH:ubiquinone oxidoreductase subunit B7
Low tissue specificity
Detected in all
NDUFB8
ENSSSCG00000006166
NADH dehydrogenase
Tissue enhanced
Detected in all
lens:
60.6
NDUFB9
ENSSSCG00000005976
ENSG00000147684
NADH:ubiquinone oxidoreductase subunit B9
Tissue enhanced
Detected in all
skeletal muscle:
173.3
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