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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15861 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SYAP1
ENSSSCG00000012148
ENSG00000169895
Synapse-associated protein 1 isoform 2
Low tissue specificity
Detected in all
SYBU
ENSSSCG00000006023
ENSG00000147642
Syntabulin
Tissue enhanced
Detected in many
brain:
49.8
SYCE1
ENSSSCG00000010779
ENSG00000171772
Synaptonemal complex central element protein 1
Tissue enriched
Detected in all
testis:
65.4
SYCE1L
ENSSSCG00000002700
ENSG00000205078
Synaptonemal complex central element protein 1 like
Group enriched
Detected in many
cornea:
7.9
testis:
28.5
SYCE2
ENSSSCG00000013740
ENSG00000161860
Synaptonemal complex central element protein 2
Tissue enriched
Detected in all
testis:
57.4
SYCE3
ENSSSCG00000000963
ENSG00000217442
Synaptonemal complex central element protein 3
Tissue enriched
Detected in all
testis:
63.3
SYDE1
ENSSSCG00000013829
ENSG00000105137
Synapse defective Rho GTPase homolog 1
Low tissue specificity
Detected in all
SYDE2
ENSSSCG00000006947
ENSG00000097096
Synapse defective Rho GTPase homolog 2
Low tissue specificity
Detected in all
SYF2
ENSSSCG00000037481
ENSG00000117614
SYF2 pre-mRNA splicing factor
Low tissue specificity
Detected in all
SYK
ENSSSCG00000009589
ENSG00000165025
Tyrosine-protein kinase SYK
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
upper respiratory system:
24.1
SYMPK
ENSSSCG00000003093
ENSG00000125755
Symplekin
Low tissue specificity
Detected in all
SYN1
ENSSSCG00000012276
ENSG00000008056
Synapsin-1
Tissue enriched
Detected in many
brain:
71.7
SYNC
ENSSSCG00000021232
ENSG00000162520
Syncoilin, intermediate filament protein
Tissue enhanced
Detected in many
cervix:
44.4
SYNCRIP
ENSSSCG00000004294
ENSG00000135316
Synaptotagmin binding cytoplasmic RNA interacting protein
Low tissue specificity
Detected in all
SYNE2
ENSSSCG00000005110
ENSG00000054654
Spectrin repeat containing nuclear envelope protein 2
Low tissue specificity
Detected in many
SYNE3
ENSSSCG00000002495
ENSG00000176438
Spectrin repeat containing nuclear envelope family member 3
Low tissue specificity
Detected in all
SYNE4
ENSSSCG00000002929
ENSG00000181392
Spectrin repeat containing nuclear envelope family member 4
Tissue enhanced
Detected in many
male glands:
29.1
salivary gland:
15.6
SYNGAP1
ENSSSCG00000001513
ENSG00000197283
Synaptic Ras GTPase activating protein 1
Tissue enhanced
Detected in many
brain:
38.8
SYNGR1
ENSSSCG00000020873
ENSG00000100321
Synaptogyrin-1
Tissue enhanced
Detected in all
brain:
44.1
SYNGR2
ENSSSCG00000031600
ENSG00000108639
Synaptogyrin 2
Tissue enhanced
Detected in many
male glands:
78.2
SYNGR3
ENSSSCG00000008036
ENSG00000127561
Synaptogyrin 3
Tissue enriched
Detected in some
brain:
27.9
SYNJ1
ENSSSCG00000012035
ENSG00000159082
Synaptojanin 1
Tissue enhanced
Detected in all
brain:
43.7
SYNJ2
ENSSSCG00000012315
ENSG00000078269
Synaptojanin 2
Tissue enhanced
Detected in many
brain:
35.4
male glands:
35.5
SYNJ2BP
ENSSSCG00000026389
ENSG00000213463
Synaptojanin-2-binding protein
Low tissue specificity
Detected in all
SYNM
ENSSSCG00000035223
ENSG00000182253
Synemin
Tissue enriched
Detected in many
smooth muscle:
222.0
SYNPO
ENSSSCG00000038453
ENSG00000171992
Synaptopodin
Tissue enhanced
Detected in many
cartilage:
87.7
skeletal muscle:
115.4
SYNPO2
ENSSSCG00000009111
ENSG00000172403
Synaptopodin 2
Tissue enhanced
Detected in many
smooth muscle:
198.1
SYNRG
ENSSSCG00000026596
ENSG00000275066
Synergin gamma
Low tissue specificity
Detected in all
SYS1-DBNDD2
ENSSSCG00000007395
SYS1-DBNDD2 readthrough (NMD candidate)
Low tissue specificity
Detected in all
SYT1
ENSSSCG00000000948
ENSG00000067715
Synaptotagmin 1
Group enriched
Detected in some
brain:
76.2
retina:
43.4
SYT11
ENSSSCG00000006506
ENSG00000132718
Synaptotagmin 11
Tissue enhanced
Detected in many
brain:
65.9
pineal gland:
17.5
SYT16
ENSSSCG00000005098
ENSG00000139973
Synaptotagmin 16
Tissue enhanced
Detected in some
brain:
22.1
stomach:
10.8
testis:
7.4
SYT17
ENSSSCG00000022200
ENSG00000103528
Synaptotagmin 17
Group enriched
Detected in all
brain:
26.4
lens:
68.5
SYT3
ENSSSCG00000003222
ENSG00000213023
Synaptotagmin 3
Tissue enhanced
Detected in many
brain:
16.3
skin:
14.5
SYT5
ENSSSCG00000021843
ENSG00000129990
Synaptotagmin 5
Tissue enhanced
Detected in many
brain:
38.7
choroid plexus:
16.8
pineal gland:
17.3
pituitary gland:
29.8
SYT6
ENSSSCG00000006758
ENSG00000134207
Synaptotagmin 6
Tissue enriched
Detected in some
brain:
25.2
SYT7
ENSSSCG00000021906
ENSG00000011347
Synaptotagmin 7
Tissue enhanced
Detected in many
brain:
38.8
SYT8
ENSSSCG00000023537
ENSG00000149043
Synaptotagmin 8
Group enriched
Detected in some
adrenal gland:
24.0
stomach:
56.2
urinary bladder:
21.8
SYT9
ENSSSCG00000014599
ENSG00000170743
Synaptotagmin 9
Low tissue specificity
Detected in all
SYTL1
ENSSSCG00000003572
ENSG00000142765
Synaptotagmin like 1
Tissue enhanced
Detected in many
cornea:
35.9
male glands:
35.4
stomach:
26.0
SYTL3
ENSSSCG00000004057
ENSG00000164674
Synaptotagmin like 3
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
SYTL4
ENSSSCG00000012484
ENSG00000102362
Synaptotagmin like 4
Tissue enhanced
Detected in many
pituitary gland:
34.7
SYTL5
ENSSSCG00000012233
ENSG00000147041
Synaptotagmin like 5
Tissue enhanced
Detected in many
male glands:
39.9
stomach:
20.9
SYVN1
ENSSSCG00000027057
ENSG00000162298
Synoviolin 1
Low tissue specificity
Detected in all
SZRD1
ENSSSCG00000031083
ENSG00000055070
SUZ RNA binding domain containing 1
Low tissue specificity
Detected in all
SZT2
ENSSSCG00000003941
ENSG00000198198
SZT2, KICSTOR complex subunit
Low tissue specificity
Detected in all
TAAR1
ENSSSCG00000035807
ENSG00000146399
Trace amine associated receptor 1
Tissue enhanced
Detected in some
kidney:
12.3
lung:
4.6
stomach:
15.3
TAB1
ENSSSCG00000000087
ENSG00000100324
TGF-beta-activated kinase 1 and MAP3K7-binding protein 1
Low tissue specificity
Detected in all
TAB2
ENSSSCG00000004110
ENSG00000055208
TGF-beta activated kinase 1/MAP3K7 binding protein 2
Low tissue specificity
Detected in all
TAB3
ENSSSCG00000012203
ENSG00000157625
TGF-beta activated kinase 1 and MAP3K7 binding protein 3
Low tissue specificity
Detected in all
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