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Human disease related genes
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UMAP gene cluster
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14807 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ATRN
ENSSSCG00000007153
ENSG00000088812
Attractin
Low tissue specificity
Detected in all
ATRNL1
ENSSSCG00000010654
ENSG00000107518
Attractin like 1
Tissue enhanced
Detected in all
brain:
45.9
ATRX
ENSSSCG00000012434
ENSG00000085224
ATRX, chromatin remodeler
Low tissue specificity
Detected in all
ATXN1
ENSSSCG00000001065
ENSG00000124788
Ataxin 1
Low tissue specificity
Detected in all
ATXN10
ENSSSCG00000024864
ENSG00000130638
Ataxin 10
Tissue enhanced
Detected in all
lens:
59.5
ATXN1L
ENSSSCG00000038917
ENSG00000224470
Ataxin 1 like
Low tissue specificity
Detected in all
ATXN2
ENSSSCG00000009834
ENSG00000204842
Ataxin 2
Low tissue specificity
Detected in all
ATXN2L
ENSSSCG00000021845
ENSG00000168488
Ataxin 2 like
Tissue enhanced
Detected in all
testis:
137.6
ATXN7L1
ENSSSCG00000015432
ENSG00000146776
Ataxin 7 like 1
Low tissue specificity
Detected in all
ATXN7L2
ENSSSCG00000006828
ENSG00000162650
Ataxin 7 like 2
Low tissue specificity
Detected in all
ATXN7L3
ENSSSCG00000017362
ENSG00000087152
Ataxin 7 like 3
Low tissue specificity
Detected in all
ATXN7L3B
ENSSSCG00000040327
ENSG00000253719
Ataxin 7 like 3B
Low tissue specificity
Detected in all
AUH
ENSSSCG00000009591
ENSG00000148090
AU RNA binding methylglutaconyl-CoA hydratase
Low tissue specificity
Detected in all
AUNIP
ENSSSCG00000003552
ENSG00000127423
Aurora kinase A and ninein interacting protein
Low tissue specificity
Detected in all
AUP1
ENSSSCG00000008268
ENSG00000115307
AUP1, lipid droplet regulating VLDL assembly factor
Low tissue specificity
Detected in all
AURKAIP1
ENSSSCG00000038474
ENSG00000175756
Aurora kinase A interacting protein 1
Low tissue specificity
Detected in all
AURKB
ENSSSCG00000028924
ENSG00000178999
Aurora kinase B
Tissue enhanced
Detected in many
lymphoid tissue:
31.7
AURKC
ENSSSCG00000034174
ENSG00000105146
Aurora kinase C
Tissue enhanced
Detected in all
testis:
36.7
AUTS2
ENSSSCG00000007727
ENSG00000158321
Autism susceptibility gene 2 protein
Tissue enhanced
Detected in many
cartilage:
165.4
male glands:
64.3
AVIL
ENSSSCG00000029571
ENSG00000135407
Advillin
Tissue enhanced
Detected in all
skeletal muscle:
39.6
AVL9
ENSSSCG00000023445
ENSG00000105778
AVL9 cell migration associated
Low tissue specificity
Detected in all
AVPI1
ENSSSCG00000036824
ENSG00000119986
Arginine vasopressin induced 1
Tissue enhanced
Detected in all
adrenal gland:
34.4
ovary:
38.7
AVPR1A
ENSSSCG00000033383
ENSG00000166148
Arginine vasopressin receptor 1A
Tissue enriched
Detected in all
adrenal gland:
79.8
AVPR1B
ENSSSCG00000015639
ENSG00000198049
Arginine vasopressin receptor 1B
Tissue enriched
Detected in all
pituitary gland:
30.1
AXIN1
ENSSSCG00000023204
ENSG00000103126
Axin 1
Low tissue specificity
Detected in all
AXIN2
ENSSSCG00000017265
ENSG00000168646
Axin 2
Tissue enhanced
Detected in all
cartilage:
55.2
AXL
ENSSSCG00000038806
ENSG00000167601
Tyrosine-protein kinase receptor UFO precursor
Low tissue specificity
Detected in all
AZI2
ENSSSCG00000028258
ENSG00000163512
5-azacytidine induced 2
Low tissue specificity
Detected in all
AZIN1
ENSSSCG00000023873
ENSG00000155096
Antizyme inhibitor 1
Low tissue specificity
Detected in all
AZIN2
ENSSSCG00000003619
ENSG00000142920
Antizyme inhibitor 2
Tissue enriched
Detected in many
testis:
52.3
B2M
ENSSSCG00000004687
ENSG00000166710
Beta-2-microglobulin
Low tissue specificity
Detected in all
B3GALNT2
ENSSSCG00000033692
ENSG00000162885
Beta-1,3-N-acetylgalactosaminyltransferase 2
Low tissue specificity
Detected in all
B3GALT2
ENSSSCG00000010800
ENSG00000162630
Beta-1,3-galactosyltransferase 2
Tissue enhanced
Detected in many
heart:
47.6
large intestine:
24.5
male glands:
32.7
B3GALT4
ENSSSCG00000001503
ENSG00000235863
Beta-1,3-galactosyltransferase 4
Tissue enhanced
Detected in all
epididymis:
42.4
B3GALT5
ENSSSCG00000038056
ENSG00000183778
Beta-1,3-galactosyltransferase 5
Tissue enhanced
Detected in all
esophagus:
40.8
large intestine:
45.5
stomach:
56.6
B3GALT6
ENSSSCG00000022151
ENSG00000176022
Beta-1,3-galactosyltransferase 6
Low tissue specificity
Detected in all
B3GAT2
ENSSSCG00000026246
ENSG00000112309
Beta-1,3-glucuronyltransferase 2
Tissue enhanced
Detected in many
brain:
13.5
retina:
11.3
B3GAT3
ENSSSCG00000020809
ENSG00000149541
Beta-1,3-glucuronyltransferase 3
Low tissue specificity
Detected in all
B3GLCT
ENSSSCG00000009335
ENSG00000187676
Beta 3-glucosyltransferase
Low tissue specificity
Detected in all
B3GNT2
ENSSSCG00000008374
ENSG00000170340
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
Low tissue specificity
Detected in all
B3GNT3
ENSSSCG00000013886
ENSG00000179913
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
Tissue enhanced
Detected in many
male glands:
34.7
stomach:
49.8
B3GNT5
ENSSSCG00000024393
ENSG00000176597
Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase
Tissue enhanced
Detected in many
epididymis:
52.4
lens:
60.4
B3GNT7
ENSSSCG00000033015
ENSG00000156966
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
Tissue enhanced
Detected in all
cornea:
31.8
large intestine:
40.0
lens:
33.5
B3GNT8
ENSSSCG00000032536
ENSG00000177191
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8
Tissue enhanced
Detected in many
kidney:
20.7
large intestine:
11.7
B3GNT9
ENSSSCG00000040139
ENSG00000237172
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
Tissue enhanced
Detected in all
cartilage:
37.5
B3GNTL1
ENSSSCG00000027229
ENSG00000175711
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1
Tissue enhanced
Detected in all
lens:
68.0
B4GALNT1
ENSSSCG00000000433
ENSG00000135454
Beta-1,4-N-acetyl-galactosaminyltransferase 1
Tissue enhanced
Detected in many
ovary:
43.6
thyroid gland:
23.9
B4GALT1
ENSSSCG00000035454
ENSG00000086062
Beta-1,4-galactosyltransferase 1
Low tissue specificity
Detected in all
B4GALT2
ENSSSCG00000026793
ENSG00000117411
Beta-1,4-galactosyltransferase 2
Low tissue specificity
Detected in all
B4GALT5
ENSSSCG00000007465
ENSG00000158470
Beta-1,4-galactosyltransferase 5
Low tissue specificity
Detected in all
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