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Gene name
Human disease related genes
Uniprot keyword
Chromosome
External id
Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Term
Gene name
Class
Cancers
Cardiovascular diseases
Congenital disorders of metabolism
Congenital malformations
Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
Musculoskeletal diseases
Nervous system diseases
Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14807 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000031088
Low tissue specificity
Detected in all
na
ENSSSCG00000031093
Low tissue specificity
Detected in all
na
ENSSSCG00000031097
Low tissue specificity
Detected in all
na
ENSSSCG00000031117
Dihydrofolate reductase
Tissue enhanced
Detected in all
pineal gland:
27.1
na
ENSSSCG00000031119
Tissue enhanced
Detected in many
penis:
37.4
na
ENSSSCG00000031121
ENSG00000198860
Low tissue specificity
Detected in all
na
ENSSSCG00000031132
ENSG00000184990
Low tissue specificity
Detected in all
na
ENSSSCG00000031138
Low tissue specificity
Detected in all
na
ENSSSCG00000031140
Low tissue specificity
Detected in all
na
ENSSSCG00000031143
Tissue enhanced
Detected in many
testis:
10.4
na
ENSSSCG00000031152
Tissue enhanced
Detected in all
male glands:
55.3
na
ENSSSCG00000031169
ENSG00000126261
Low tissue specificity
Detected in all
na
ENSSSCG00000031180
ENSG00000274209
Low tissue specificity
Detected in all
na
ENSSSCG00000031189
Low tissue specificity
Detected in many
na
ENSSSCG00000031193
Tissue enhanced
Detected in many
brain:
53.8
pineal gland:
29.9
pituitary gland:
24.2
na
ENSSSCG00000031196
Tissue enhanced
Detected in many
kidney:
6.3
na
ENSSSCG00000031197
Low tissue specificity
Detected in all
na
ENSSSCG00000031199
ENSG00000125122
Low tissue specificity
Detected in all
na
ENSSSCG00000031204
Low tissue specificity
Detected in all
na
ENSSSCG00000031205
ENSG00000104499
Tissue enhanced
Detected in many
lymphoid tissue:
15.5
testis:
17.3
na
ENSSSCG00000031210
Low tissue specificity
Detected in many
na
ENSSSCG00000031212
ENSG00000203668
Low tissue specificity
Detected in all
na
ENSSSCG00000031224
Low tissue specificity
Detected in all
na
ENSSSCG00000031225
Tissue enhanced
Detected in many
epididymis:
27.8
na
ENSSSCG00000031226
Low tissue specificity
Detected in all
na
ENSSSCG00000031227
Tissue enhanced
Detected in all
choroid plexus:
22.0
na
ENSSSCG00000031239
Low tissue specificity
Detected in many
na
ENSSSCG00000031242
ENSG00000166527
Low tissue specificity
Detected in all
na
ENSSSCG00000031243
Low tissue specificity
Detected in all
na
ENSSSCG00000031245
Low tissue specificity
Detected in all
na
ENSSSCG00000031246
Tissue enhanced
Detected in many
liver:
28.1
na
ENSSSCG00000031255
Tissue enhanced
Detected in many
male glands:
57.4
na
ENSSSCG00000031257
Low tissue specificity
Detected in many
na
ENSSSCG00000031258
Low tissue specificity
Detected in all
na
ENSSSCG00000031276
Tissue enhanced
Detected in all
lymphoid tissue:
17.0
na
ENSSSCG00000031278
Low tissue specificity
Detected in all
na
ENSSSCG00000031281
Low tissue specificity
Detected in all
na
ENSSSCG00000031287
Tissue enhanced
Detected in many
cartilage:
42.7
ovary:
21.3
na
ENSSSCG00000031288
ENSG00000102805
Low tissue specificity
Detected in all
na
ENSSSCG00000031289
Tissue enhanced
Detected in many
lens:
47.4
na
ENSSSCG00000031292
Tissue enhanced
Detected in many
adipose tissue:
141.2
skeletal muscle:
106.3
na
ENSSSCG00000031293
Tissue enhanced
Detected in many
brain:
57.1
pineal gland:
33.1
retina:
19.3
na
ENSSSCG00000031300
Tissue enhanced
Detected in many
testis:
10.3
na
ENSSSCG00000031306
Low tissue specificity
Detected in all
na
ENSSSCG00000031307
Tissue enriched
Detected in some
testis:
173.3
na
ENSSSCG00000031313
Tissue enhanced
Detected in many
testis:
13.9
na
ENSSSCG00000031316
Low tissue specificity
Detected in many
na
ENSSSCG00000031317
Low tissue specificity
Detected in all
na
ENSSSCG00000031327
Low tissue specificity
Detected in all
na
ENSSSCG00000031330
Low tissue specificity
Detected in many
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