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UMAP gene cluster
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Subclass
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Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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14807 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ARPC5L
ENSSSCG00000005596
ENSG00000136950
Actin-related protein 2/3 complex subunit 5-like protein
Low tissue specificity
Detected in all
ARRB1
ENSSSCG00000014852
ENSG00000137486
Arrestin beta 1
Low tissue specificity
Detected in all
ARRB2
ENSSSCG00000017918
ENSG00000141480
Arrestin beta 2
Low tissue specificity
Detected in all
ARRDC1
ENSSSCG00000039824
ENSG00000197070
Arrestin domain containing 1
Low tissue specificity
Detected in all
ARRDC2
ENSSSCG00000013893
ENSG00000105643
Arrestin domain containing 2
Low tissue specificity
Detected in many
ARRDC3
ENSSSCG00000014156
ENSG00000113369
Arrestin domain containing 3
Low tissue specificity
Detected in all
ARRDC4
ENSSSCG00000002252
ENSG00000140450
Arrestin domain containing 4
Tissue enhanced
Detected in all
lens:
48.0
ovary:
47.3
ARRDC5
ENSSSCG00000037183
ENSG00000205784
Arrestin domain containing 5
Tissue enriched
Detected in all
testis:
52.4
ARSA
ENSSSCG00000032428
ENSG00000100299
Arylsulfatase A precursor
Low tissue specificity
Detected in all
ARSB
ENSSSCG00000038535
ENSG00000113273
Arylsulfatase B
Tissue enhanced
Detected in many
brain:
56.3
kidney:
31.9
ARSD
ENSSSCG00000020871
ENSG00000006756
Arylsulfatase D
Low tissue specificity
Detected in all
ARSE
ENSSSCG00000022129
ENSG00000157399
Arylsulfatase E precursor
Tissue enhanced
Detected in many
cartilage:
24.1
ARSG
ENSSSCG00000017261
ENSG00000141337
Arylsulfatase G
Group enriched
Detected in all
choroid plexus:
21.9
liver:
71.3
lymphoid tissue:
26.5
ARSJ
ENSSSCG00000009122
ENSG00000180801
Arylsulfatase family member J
Tissue enhanced
Detected in many
cartilage:
59.1
ARSK
ENSSSCG00000014139
ENSG00000164291
Arylsulfatase family member K
Low tissue specificity
Detected in all
ART4
ENSSSCG00000000607
ENSG00000111339
Ecto-ADP-ribosyltransferase 4 isoform 1
Tissue enhanced
Detected in many
lymphoid tissue:
28.9
ARV1
ENSSSCG00000010179
ENSG00000173409
Protein ARV1
Tissue enhanced
Detected in all
brain:
33.1
ARVCF
ENSSSCG00000010133
ENSG00000099889
ARVCF, delta catenin family member
Tissue enriched
Detected in all
lens:
141.1
AS3MT
ENSSSCG00000010592
ENSG00000214435
Arsenite methyltransferase
Tissue enhanced
Detected in all
liver:
61.5
ASAH1
ENSSSCG00000006995
ENSG00000104763
N-acylsphingosine amidohydrolase 1
Tissue enhanced
Detected in all
choroid plexus:
100.9
ASAP1
ENSSSCG00000028759
ENSG00000153317
ArfGAP with SH3 domain, ankyrin repeat and PH domain 1
Low tissue specificity
Detected in all
ASAP2
ENSSSCG00000008642
ENSG00000151693
ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
Low tissue specificity
Detected in all
ASAP3
ENSSSCG00000028108
ENSG00000088280
ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
Low tissue specificity
Detected in all
ASB1
ENSSSCG00000016340
ENSG00000065802
Ankyrin repeat and SOCS box containing 1
Low tissue specificity
Detected in all
ASB10
ENSSSCG00000029241
ENSG00000146926
Ankyrin repeat and SOCS box containing 10
Tissue enhanced
Detected in some
heart:
26.0
skeletal muscle:
45.9
ASB13
ENSSSCG00000011145
ENSG00000196372
Ankyrin repeat and SOCS box containing 13
Tissue enhanced
Detected in all
kidney:
56.4
ASB16
ENSSSCG00000039673
ENSG00000161664
Ankyrin repeat and SOCS box containing 16
Tissue enhanced
Detected in all
skeletal muscle:
61.1
ASB2
ENSSSCG00000002467
ENSG00000100628
Ankyrin repeat and SOCS box containing 2
Group enriched
Detected in many
heart:
61.9
skeletal muscle:
119.2
ASB5
ENSSSCG00000030395
ENSG00000164122
Ankyrin repeat and SOCS box containing 5
Tissue enriched
Detected in all
skeletal muscle:
107.3
ASB6
ENSSSCG00000005679
ENSG00000148331
Ankyrin repeat and SOCS box protein 6
Low tissue specificity
Detected in all
ASB7
ENSSSCG00000004821
ENSG00000183475
Ankyrin repeat and SOCS box containing 7
Low tissue specificity
Detected in all
ASB8
ENSSSCG00000021024
ENSG00000177981
Ankyrin repeat and SOCS box containing 8
Low tissue specificity
Detected in all
ASB9
ENSSSCG00000012132
ENSG00000102048
Ankyrin repeat and SOCS box protein 9
Tissue enhanced
Detected in many
cornea:
21.6
mouth:
21.9
ASCC1
ENSSSCG00000023130
ENSG00000138303
Activating signal cointegrator 1 complex subunit 1 isoform 1
Low tissue specificity
Detected in all
ASCC2
ENSSSCG00000025186
ENSG00000100325
Activating signal cointegrator 1 complex subunit 2
Tissue enhanced
Detected in all
lens:
55.2
ASCC3
ENSSSCG00000004358
ENSG00000112249
Activating signal cointegrator 1 complex subunit 3
Low tissue specificity
Detected in all
ASCL3
ENSSSCG00000014572
ENSG00000176009
Achaete-scute family bHLH transcription factor 3
Tissue enhanced
Detected in many
salivary gland:
11.9
upper respiratory system:
21.0
ASF1A
ENSSSCG00000004247
ENSG00000111875
Anti-silencing function 1A histone chaperone
Low tissue specificity
Detected in all
ASF1B
ENSSSCG00000013772
ENSG00000105011
Histone chaperone ASF1B
Tissue enhanced
Detected in many
lymphoid tissue:
26.6
testis:
22.3
upper respiratory system:
26.7
ASH1L
ENSSSCG00000006508
ENSG00000116539
ASH1 like histone lysine methyltransferase
Low tissue specificity
Detected in all
ASH2L
ENSSSCG00000021898
ENSG00000129691
Set1/Ash2 histone methyltransferase complex subunit ASH2
Low tissue specificity
Detected in all
ASIC3
ENSSSCG00000027024
ENSG00000213199
Acid sensing ion channel subunit 3
Tissue enhanced
Detected in many
lymphoid tissue:
22.2
ASMTL
ENSSSCG00000037174
ENSG00000169093
Acetylserotonin O-methyltransferase like
Low tissue specificity
Detected in all
ASNA1
ENSSSCG00000038776
ENSG00000198356
ArsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
Tissue enhanced
Detected in all
lens:
37.9
ASNS
ENSSSCG00000015340
ENSG00000070669
Asparagine synthetase
Low tissue specificity
Detected in all
ASNSD1
ENSSSCG00000016041
ENSG00000138381
Asparagine synthetase domain containing 1
Low tissue specificity
Detected in all
ASPH
ENSSSCG00000025087
ENSG00000198363
Aspartate beta-hydroxylase
Tissue enhanced
Detected in all
male glands:
108.5
ASPHD2
ENSSSCG00000009959
ENSG00000128203
Aspartate beta-hydroxylase domain containing 2
Tissue enhanced
Detected in many
brain:
22.6
stomach:
18.2
ASPM
ENSSSCG00000010896
ENSG00000066279
Abnormal spindle microtubule assembly
Tissue enhanced
Detected in many
lymphoid tissue:
29.3
ASPN
ENSSSCG00000008072
ENSG00000106819
Asporin precursor
Tissue enriched
Detected in all
dura mater:
89.1
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