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Chromosome
1
2
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16194 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CCDC86
ENSSSCG00000013105
ENSG00000110104
Coiled-coil domain containing 86
Low tissue specificity
Detected in all
CCDC87
ENSSSCG00000012933
ENSG00000182791
Coiled-coil domain containing 87
Tissue enriched
Detected in many
testis:
37.6
CCDC88A
ENSSSCG00000008406
ENSG00000115355
Coiled-coil domain containing 88A
Tissue enhanced
Detected in many
brain:
42.8
testis:
42.0
CCDC89
ENSSSCG00000014908
ENSG00000179071
Coiled-coil domain containing 89
Group enriched
Detected in many
stomach:
26.1
testis:
40.6
CCDC9
ENSSSCG00000024240
ENSG00000105321
Coiled-coil domain containing 9
Tissue enhanced
Detected in all
cartilage:
63.8
CCDC90B
ENSSSCG00000014903
ENSG00000137500
Coiled-coil domain containing 90B
Low tissue specificity
Detected in all
CCDC91
ENSSSCG00000024232
ENSG00000123106
Coiled-coil domain-containing protein 91
Low tissue specificity
Detected in all
CCDC92
ENSSSCG00000009764
ENSG00000119242
Coiled-coil domain containing 92
Tissue enhanced
Detected in all
brain:
28.6
testis:
50.6
CCDC93
ENSSSCG00000015714
ENSG00000125633
Coiled-coil domain containing 93
Low tissue specificity
Detected in all
CCDC94
ENSSSCG00000013499
ENSG00000105248
Coiled-coil domain containing 94
Low tissue specificity
Detected in all
CCDC97
ENSSSCG00000003016
ENSG00000142039
Coiled-coil domain containing 97
Low tissue specificity
Detected in all
CCDC9B
ENSSSCG00000023975
ENSG00000188549
Coiled-coil domain containing 9B
Low tissue specificity
Detected in all
CCHCR1
ENSSSCG00000001391
ENSG00000204536
Coiled-coil alpha-helical rod protein 1
Tissue enriched
Detected in many
testis:
62.1
CCK
ENSSSCG00000011277
ENSG00000187094
Cholecystokinin precursor
Group enriched
Detected in some
brain:
94.4
heart:
73.4
CCKAR
ENSSSCG00000023501
ENSG00000163394
Cholecystokinin A receptor
Tissue enhanced
Detected in all
gallbladder:
30.0
small intestine:
18.8
CCKBR
ENSSSCG00000033806
ENSG00000110148
Cholecystokinin B receptor
Group enriched
Detected in many
brain:
22.1
fallopian tube:
9.6
CCL11
ENSSSCG00000040648
ENSG00000108700
C-C motif chemokine 8 precursor
Low tissue specificity
Detected in all
CCL14
ENSSSCG00000034722
ENSG00000276409
C-C motif chemokine 14 precursor
Tissue enhanced
Detected in many
adipose tissue:
73.8
synovial tissue:
65.8
CCL17
ENSSSCG00000023852
ENSG00000102970
C-C motif chemokine 17 precursor
Group enriched
Detected in some
lymphoid tissue:
32.7
ovary:
21.7
CCL19
ENSSSCG00000010966
ENSG00000172724
C-C motif chemokine 19 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
113.4
CCL2
ENSSSCG00000017723
ENSG00000108691
C-C motif chemokine 2
Tissue enhanced
Detected in many
aorta:
52.5
ovary:
88.5
CCL20
ENSSSCG00000016254
ENSG00000115009
C-C motif chemokine 20 precursor
Tissue enhanced
Detected in all
adrenal gland:
29.1
lymphoid tissue:
26.2
CCL21
ENSSSCG00000038162
ENSG00000137077
C-C motif chemokine 21 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
111.9
ovary:
39.7
CCL22
ENSSSCG00000002821
ENSG00000102962
C-C motif chemokine 22 precursor
Group enriched
Detected in some
lymphoid tissue:
35.1
testis:
57.7
CCL26
ENSSSCG00000039874
ENSG00000006606
C-C motif chemokine 26 precursor
Tissue enhanced
Detected in many
cartilage:
27.6
CCL28
ENSSSCG00000016871
ENSG00000151882
C-C motif chemokine 28 precursor
Tissue enhanced
Detected in many
endometrium:
49.2
male glands:
37.9
salivary gland:
37.3
upper respiratory system:
29.0
CCL3L1
ENSSSCG00000017700
ENSG00000277632
C-C motif chemokine 3-like 1 precursor
Tissue enhanced
Detected in many
dura mater:
10.8
liver:
15.6
lung:
10.2
CCL4
ENSSSCG00000038096
ENSG00000275302,ENSG00000276070
C-C motif chemokine 4
Tissue enhanced
Detected in some
bone marrow:
11.2
liver:
4.3
CCL5
ENSSSCG00000017705
ENSG00000271503
C-C motif chemokine 5 precursor
Tissue enhanced
Detected in many
large intestine:
83.3
small intestine:
60.4
stomach:
49.5
CCM2
ENSSSCG00000016734
ENSG00000136280
CCM2 scaffolding protein
Tissue enhanced
Detected in all
lens:
84.1
CCM2L
ENSSSCG00000007239
ENSG00000101331
CCM2 like scaffolding protein
Low tissue specificity
Detected in all
CCNB1
ENSSSCG00000029326
ENSG00000134057
G2/mitotic-specific cyclin-B1
Low tissue specificity
Detected in all
CCNB1IP1
ENSSSCG00000002144
ENSG00000100814
Cyclin B1 interacting protein 1
Low tissue specificity
Detected in all
CCNB2
ENSSSCG00000004588
ENSG00000157456
G2/mitotic-specific cyclin-B2
Tissue enhanced
Detected in many
lymphoid tissue:
14.0
testis:
48.3
CCNB3
ENSSSCG00000012307
ENSG00000147082
Cyclin B3
Low tissue specificity
Detected in all
CCND1
ENSSSCG00000037900
ENSG00000110092
Cyclin D1
Low tissue specificity
Detected in many
CCND2
ENSSSCG00000038694
ENSG00000118971
G1/S-specific cyclin-D2
Low tissue specificity
Detected in all
CCND3
ENSSSCG00000032284
ENSG00000112576
G1/S-specific cyclin-D3
Low tissue specificity
Detected in all
CCNDBP1
ENSSSCG00000034771
ENSG00000166946
Cyclin D1 binding protein 1
Low tissue specificity
Detected in all
CCNE2
ENSSSCG00000006095
ENSG00000175305
G1/S-specific cyclin-E2
Tissue enhanced
Detected in all
lymphoid tissue:
28.4
CCNF
ENSSSCG00000026326
ENSG00000162063
Cyclin F
Tissue enhanced
Detected in many
epididymis:
32.5
lymphoid tissue:
15.4
CCNG1
ENSSSCG00000017024
ENSG00000113328
Cyclin-G1
Tissue enriched
Detected in all
lens:
343.5
CCNG2
ENSSSCG00000008988
ENSG00000138764
Cyclin G2
Tissue enhanced
Detected in all
brain:
47.2
CCNH
ENSSSCG00000014147
ENSG00000134480
Cyclin-H
Low tissue specificity
Detected in all
CCNI
ENSSSCG00000008987
ENSG00000118816
Cyclin I
Low tissue specificity
Detected in all
CCNJ
ENSSSCG00000010502
ENSG00000107443
Cyclin J
Low tissue specificity
Detected in all
CCNJL
ENSSSCG00000017036
ENSG00000135083
Cyclin J like
Tissue enhanced
Detected in many
fallopian tube:
14.6
lymphoid tissue:
18.6
CCNK
ENSSSCG00000002509
ENSG00000090061
Cyclin K
Low tissue specificity
Detected in all
CCNL1
ENSSSCG00000029352
ENSG00000163660
Cyclin L1
Low tissue specificity
Detected in all
CCNL2
ENSSSCG00000003354
ENSG00000221978
Cyclin L2
Low tissue specificity
Detected in all
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