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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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16194 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TTC28
ENSSSCG00000009968
ENSG00000100154
Tetratricopeptide repeat domain 28
Low tissue specificity
Detected in all
TTC3
ENSSSCG00000012062
ENSG00000182670
Tetratricopeptide repeat domain 3
Low tissue specificity
Detected in all
TTC31
ENSSSCG00000008275
ENSG00000115282
Tetratricopeptide repeat domain 31
Low tissue specificity
Detected in all
TTC33
ENSSSCG00000034966
ENSG00000113638
Tetratricopeptide repeat domain 33
Low tissue specificity
Detected in all
TTC38
ENSSSCG00000000003
ENSG00000075234
Tetratricopeptide repeat domain 38
Low tissue specificity
Detected in all
TTC39A
ENSSSCG00000003875
ENSG00000085831
Tetratricopeptide repeat domain 39A
Tissue enhanced
Detected in many
male glands:
74.3
TTC39B
ENSSSCG00000005186
ENSG00000155158
Tetratricopeptide repeat domain 39B
Low tissue specificity
Detected in many
TTC39C
ENSSSCG00000003710
ENSG00000168234
Tetratricopeptide repeat domain 39C
Tissue enhanced
Detected in all
liver:
43.1
TTC4
ENSSSCG00000003844
ENSG00000243725
Tetratricopeptide repeat domain 4
Low tissue specificity
Detected in all
TTC5
ENSSSCG00000002145
ENSG00000136319
Tetratricopeptide repeat domain 5
Low tissue specificity
Detected in all
TTC7A
ENSSSCG00000008434
ENSG00000068724
Tetratricopeptide repeat domain 7A
Tissue enhanced
Detected in many
lymphoid tissue:
45.9
stomach:
47.9
TTC7B
ENSSSCG00000002436
ENSG00000165914
Tetratricopeptide repeat domain 7B
Tissue enhanced
Detected in all
epididymis:
55.7
male glands:
46.7
TTC8
ENSSSCG00000002428
ENSG00000165533
Tetratricopeptide repeat domain 8
Tissue enhanced
Detected in many
pituitary gland:
31.1
TTC9
ENSSSCG00000020701
ENSG00000133985
Tetratricopeptide repeat domain 9
Tissue enhanced
Detected in many
brain:
22.7
choroid plexus:
54.1
TTC9B
ENSSSCG00000002991
ENSG00000174521
Tetratricopeptide repeat domain 9B
Tissue enhanced
Detected in many
brain:
20.1
TTC9C
ENSSSCG00000035472
ENSG00000162222
Tetratricopeptide repeat domain 9C
Low tissue specificity
Detected in all
TTF1
ENSSSCG00000005725
ENSG00000125482
Transcription termination factor 1
Low tissue specificity
Detected in all
TTF2
ENSSSCG00000006733
ENSG00000116830
Transcription termination factor 2
Tissue enhanced
Detected in many
stomach:
31.9
TTI1
ENSSSCG00000007340
ENSG00000101407
TELO2 interacting protein 1
Low tissue specificity
Detected in all
TTI2
ENSSSCG00000015833
ENSG00000129696
TELO2 interacting protein 2
Low tissue specificity
Detected in all
TTK
ENSSSCG00000004466
ENSG00000112742
TTK protein kinase
Tissue enhanced
Detected in many
lymphoid tissue:
21.4
testis:
36.1
TTL
ENSSSCG00000008097
ENSG00000114999
Tubulin--tyrosine ligase
Low tissue specificity
Detected in all
TTLL1
ENSSSCG00000000035
ENSG00000100271
Tubulin tyrosine ligase like 1
Tissue enhanced
Detected in all
brain:
39.0
lens:
40.5
testis:
33.7
TTLL12
ENSSSCG00000000034
ENSG00000100304
Tubulin tyrosine ligase like 12
Low tissue specificity
Detected in all
TTLL4
ENSSSCG00000016201
ENSG00000135912
Tubulin tyrosine ligase like 4
Tissue enhanced
Detected in all
testis:
50.0
TTLL5
ENSSSCG00000025984
ENSG00000119685
Tubulin tyrosine ligase like 5
Tissue enhanced
Detected in all
pineal gland:
59.1
retina:
71.7
TTLL6
ENSSSCG00000017542
ENSG00000170703
Tubulin tyrosine ligase like 6
Tissue enhanced
Detected in some
fallopian tube:
9.8
large intestine:
10.6
lung:
17.5
testis:
8.9
TTLL7
ENSSSCG00000003760
ENSG00000137941
Tubulin tyrosine ligase like 7
Tissue enhanced
Detected in many
brain:
61.5
smooth muscle:
23.3
TTPAL
ENSSSCG00000036684
ENSG00000124120
Alpha tocopherol transfer protein like
Low tissue specificity
Detected in all
TTYH1
ENSSSCG00000003271
ENSG00000167614
Tweety family member 1
Tissue enhanced
Detected in all
brain:
46.8
TTYH2
ENSSSCG00000017238
ENSG00000141540
Tweety family member 2
Tissue enhanced
Detected in all
brain:
98.3
TTYH3
ENSSSCG00000007565
ENSG00000136295
Tweety family member 3
Tissue enhanced
Detected in all
stomach:
68.2
TUB
ENSSSCG00000014581
ENSG00000166402
Tubby bipartite transcription factor
Tissue enhanced
Detected in many
stomach:
57.3
TUBA1B
ENSSSCG00000000190
ENSG00000167552
Tubulin alpha-1B chain Detyrosinated tubulin alpha-1B chain
Tissue enhanced
Detected in all
brain:
214.6
lens:
298.3
TUBA1C
ENSSSCG00000000194
ENSG00000167553
Tubulin alpha 1c
Tissue enhanced
Detected in all
lens:
164.9
TUBA4A
ENSSSCG00000016216
ENSG00000127824
Tubulin alpha 4a
Tissue enhanced
Detected in many
brain:
63.2
skeletal muscle:
71.1
TUBA8
ENSSSCG00000000773
ENSG00000183785
Tubulin alpha 8
Tissue enhanced
Detected in all
skeletal muscle:
43.0
testis:
37.4
TUBAL3
ENSSSCG00000029077
ENSG00000178462
Tubulin alpha like 3
Low tissue specificity
Detected in all
TUBB
ENSSSCG00000001379
ENSG00000196230
Tubulin beta chain
Tissue enhanced
Detected in all
lens:
164.9
TUBB1
ENSSSCG00000007523
ENSG00000101162
Tubulin beta-1 chain
Tissue enhanced
Detected in many
bone marrow:
13.0
TUBB2B
ENSSSCG00000033655
ENSG00000137285
Tubulin beta-2B chain
Tissue enhanced
Detected in many
brain:
54.1
lens:
23.5
TUBB3
ENSSSCG00000002639
ENSG00000258947
Tubulin beta 3 class III
Tissue enriched
Detected in some
brain:
69.0
TUBB4A
ENSSSCG00000013545
ENSG00000104833
Tubulin beta 4A class IVa
Tissue enriched
Detected in some
brain:
146.9
TUBB4B
ENSSSCG00000037046
ENSG00000188229
Tubulin beta 4B class IVb
Tissue enhanced
Detected in all
testis:
66.8
TUBB6
ENSSSCG00000038992
ENSG00000176014
Tubulin beta 6 class V
Low tissue specificity
Detected in all
TUBD1
ENSSSCG00000017669
ENSG00000108423
Tubulin delta 1
Low tissue specificity
Detected in all
TUBE1
ENSSSCG00000004423
ENSG00000074935
Tubulin epsilon 1
Low tissue specificity
Detected in all
TUBG2
ENSSSCG00000036106
ENSG00000037042
Tubulin gamma 2
Low tissue specificity
Detected in all
TUBGCP2
ENSSSCG00000010773
ENSG00000130640
Tubulin gamma complex associated protein 2
Low tissue specificity
Detected in all
TUBGCP3
ENSSSCG00000009553
ENSG00000126216
Tubulin gamma complex associated protein 3
Low tissue specificity
Detected in all
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