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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14549 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FNDC4
ENSSSCG00000029305
ENSG00000115226
Fibronectin type III domain containing 4
Tissue enhanced
Detected in many
brain:
35.6
FNIP1
ENSSSCG00000014269
ENSG00000217128
Folliculin interacting protein 1
Low tissue specificity
Detected in all
FNIP2
ENSSSCG00000031175
ENSG00000052795
Folliculin interacting protein 2
Low tissue specificity
Detected in all
FNTA
ENSSSCG00000037221
ENSG00000168522
Farnesyltransferase, CAAX box, alpha
Tissue enhanced
Detected in all
brain:
57.4
FOCAD
ENSSSCG00000028406
ENSG00000188352
Focadhesin
Tissue enhanced
Detected in all
choroid plexus:
66.6
FOLH1B
ENSSSCG00000027093
ENSG00000086205
Glutamate carboxypeptidase 2
Tissue enhanced
Detected in many
brain:
60.3
lens:
40.1
FOLR1
ENSSSCG00000022236
ENSG00000110195
Folate receptor alpha precursor
Tissue enhanced
Detected in all
choroid plexus:
123.7
synovial tissue:
158.6
FOLR2
ENSSSCG00000014812
ENSG00000165457
Folate receptor 2 precursor
Tissue enhanced
Detected in many
cartilage:
59.1
liver:
94.8
FOPNL
ENSSSCG00000033377
ENSG00000133393
FGFR1OP N-terminal like
Low tissue specificity
Detected in all
FOS
ENSSSCG00000002383
ENSG00000170345
Proto-oncogene c-Fos
Tissue enhanced
Detected in many
aorta:
123.9
synovial tissue:
121.3
FOSB
ENSSSCG00000031616
ENSG00000125740
FosB proto-oncogene, AP-1 transcription factor subunit
Tissue enhanced
Detected in many
aorta:
129.4
cartilage:
83.1
synovial tissue:
89.9
FOSL1
ENSSSCG00000012967
ENSG00000175592
FOS like 1, AP-1 transcription factor subunit
Tissue enhanced
Detected in all
ovary:
34.3
FOSL2
ENSSSCG00000032527
ENSG00000075426
Fos-related antigen 2
Tissue enhanced
Detected in many
adrenal gland:
103.3
FOXA3
ENSSSCG00000003092
ENSG00000170608
Forkhead box A3
Tissue enhanced
Detected in many
liver:
24.1
stomach:
34.0
FOXC1
ENSSSCG00000039756
ENSG00000054598
Forkhead box C1
Tissue enhanced
Detected in many
cartilage:
121.3
salivary gland:
38.6
FOXC2
ENSSSCG00000029296
ENSG00000176692
Forkhead box C2
Tissue enhanced
Detected in many
cartilage:
61.3
penis:
46.1
vagus nerve:
63.1
FOXD3
ENSSSCG00000032215
ENSG00000187140
Forkhead box D3
Tissue enhanced
Detected in many
brain:
10.9
vagus nerve:
36.0
FOXJ2
ENSSSCG00000039580
ENSG00000065970
Forkhead box J2
Low tissue specificity
Detected in all
FOXJ3
ENSSSCG00000023266
ENSG00000198815
Forkhead box J3
Low tissue specificity
Detected in all
FOXK1
ENSSSCG00000007576
ENSG00000164916
Forkhead box K1
Low tissue specificity
Detected in all
FOXK2
ENSSSCG00000017125
ENSG00000141568
Forkhead box K2
Low tissue specificity
Detected in all
FOXM1
ENSSSCG00000000739
ENSG00000111206
Forkhead box M1
Tissue enriched
Detected in many
testis:
47.4
FOXN1
ENSSSCG00000017762
ENSG00000109101
Forkhead box N1
Group enriched
Detected in many
cornea:
11.5
lymphoid tissue:
11.5
mouth:
17.0
skin:
34.8
FOXN2
ENSSSCG00000029593
ENSG00000170802
Forkhead box N2
Low tissue specificity
Detected in all
FOXN3
ENSSSCG00000002429
ENSG00000053254
Forkhead box protein N3
Low tissue specificity
Detected in all
FOXO1
ENSSSCG00000009370
ENSG00000150907
Forkhead box O1
Low tissue specificity
Detected in all
FOXO3
ENSSSCG00000004387
ENSG00000118689
Forkhead box protein O3
Low tissue specificity
Detected in all
FOXO4
ENSSSCG00000012399
ENSG00000184481
Forkhead box O4
Low tissue specificity
Detected in all
FOXO6
ENSSSCG00000035074
ENSG00000204060
Forkhead box O6
Tissue enhanced
Detected in many
stomach:
33.9
FOXP2
ENSSSCG00000016639
ENSG00000128573
Forkhead box protein P2
Tissue enhanced
Detected in many
smooth muscle:
59.6
FOXP4
ENSSSCG00000001619
ENSG00000137166
Forkhead box P4
Tissue enhanced
Detected in all
stomach:
61.9
FOXRED1
ENSSSCG00000030017
ENSG00000110074
FAD-dependent oxidoreductase domain-containing protein 1
Tissue enhanced
Detected in all
liver:
63.9
FOXRED2
ENSSSCG00000000142
ENSG00000100350
FAD-dependent oxidoreductase domain-containing protein 2 precursor
Tissue enhanced
Detected in all
epididymis:
28.1
FOXS1
ENSSSCG00000033613
ENSG00000179772
Forkhead box S1
Low tissue specificity
Detected in all
FPGS
ENSSSCG00000005626
ENSG00000136877
Folylpolyglutamate synthase
Low tissue specificity
Detected in all
FPGT
ENSSSCG00000003783
ENSG00000254685
Fucose-1-phosphate guanylyltransferase
Low tissue specificity
Detected in all
FRA10AC1
ENSSSCG00000024359
ENSG00000148690
Protein FRA10AC1
Low tissue specificity
Detected in all
FRAS1
ENSSSCG00000008991
ENSG00000138759
Fraser extracellular matrix complex subunit 1
Tissue enhanced
Detected in many
heart:
40.1
FRAT1
ENSSSCG00000032821
ENSG00000165879
FRAT1, WNT signaling pathway regulator
Low tissue specificity
Detected in many
FRAT2
ENSSSCG00000038904
ENSG00000181274
FRAT2, WNT signaling pathway regulator
Low tissue specificity
Detected in all
FREM1
ENSSSCG00000039025
ENSG00000164946
FRAS1 related extracellular matrix 1
Tissue enhanced
Detected in many
choroid plexus:
30.0
kidney:
39.0
FREM2
ENSSSCG00000009364
ENSG00000150893
FRAS1 related extracellular matrix protein 2
Tissue enhanced
Detected in many
choroid plexus:
53.6
kidney:
23.0
thyroid gland:
23.4
FRK
ENSSSCG00000004434
ENSG00000111816
Fyn related Src family tyrosine kinase
Tissue enhanced
Detected in many
male glands:
15.9
upper respiratory system:
14.2
FRMD3
ENSSSCG00000010962
ENSG00000172159
FERM domain containing 3
Low tissue specificity
Detected in all
FRMD4A
ENSSSCG00000011056
ENSG00000151474
FERM domain containing 4A
Low tissue specificity
Detected in all
FRMD4B
ENSSSCG00000011511
ENSG00000114541
FERM domain containing 4B
Low tissue specificity
Detected in all
FRMD6
ENSSSCG00000005027
ENSG00000139926
FERM domain containing 6
Low tissue specificity
Detected in all
FRMD8
ENSSSCG00000012992
ENSG00000126391
FERM domain containing 8
Tissue enhanced
Detected in all
vagus nerve:
47.9
FRRS1
ENSSSCG00000006873
ENSG00000156869
Ferric-chelate reductase 1 precursor
Tissue enhanced
Detected in all
epididymis:
52.6
FRRS1L
ENSSSCG00000038824
ENSG00000260230
Ferric chelate reductase 1 like
Tissue enriched
Detected in many
brain:
27.5
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