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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14549 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
COL1A2
ENSSSCG00000015326
ENSG00000164692
Collagen alpha-2(I) chain precursor
Tissue enhanced
Detected in many
dura mater:
322.8
COL20A1
ENSSSCG00000037260
ENSG00000101203
Collagen type XX alpha 1 chain
Tissue enhanced
Detected in some
ductus deferens:
12.1
epididymis:
10.3
COL22A1
ENSSSCG00000005938
ENSG00000169436
Collagen type XXII alpha 1 chain
Tissue enhanced
Detected in many
testis:
12.5
vagus nerve:
33.5
COL3A1
ENSSSCG00000016034
ENSG00000168542
Collagen alpha-1(III) chain precursor
Tissue enhanced
Detected in many
dura mater:
260.5
mesothelial tissue:
240.6
COL4A2
ENSSSCG00000009545
ENSG00000134871
Collagen type IV alpha 2 chain
Tissue enhanced
Detected in many
adipose tissue:
88.3
lens:
90.1
COL4A3BP
ENSSSCG00000014081
ENSG00000113163
Collagen type IV alpha 3 binding protein
Low tissue specificity
Detected in all
COL5A1
ENSSSCG00000005751
ENSG00000130635
Collagen alpha-1(V) chain precursor
Tissue enhanced
Detected in many
cartilage:
124.1
COL5A2
ENSSSCG00000016035
ENSG00000204262
Collagen alpha-2(V) chain precursor
Tissue enhanced
Detected in many
ovary:
74.6
COL5A3
ENSSSCG00000013667
ENSG00000080573
Collagen alpha-3(V) chain precursor
Tissue enhanced
Detected in many
adipose tissue:
67.0
aorta:
38.8
bone marrow:
48.9
COL6A2
ENSSSCG00000028022
ENSG00000142173
Collagen type VI alpha 2 chain
Tissue enhanced
Detected in all
cartilage:
281.6
synovial tissue:
155.1
COL6A3
ENSSSCG00000027331
ENSG00000163359
Collagen type VI alpha 3 chain
Tissue enhanced
Detected in many
cornea:
101.7
COL6A6
ENSSSCG00000037430
ENSG00000206384
Collagen type VI alpha 6 chain
Tissue enhanced
Detected in many
adipose tissue:
23.6
heart:
21.3
lymphoid tissue:
18.9
COL7A1
ENSSSCG00000011355
ENSG00000114270
Collagen type VII alpha 1 chain
Tissue enhanced
Detected in many
skin:
55.8
COL8A1
ENSSSCG00000011973
ENSG00000144810
Collagen type VIII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
78.5
cornea:
48.6
dura mater:
40.6
COLEC11
ENSSSCG00000025629
ENSG00000118004
Collectin subfamily member 11
Tissue enriched
Detected in all
liver:
41.1
COLEC12
ENSSSCG00000040397
ENSG00000158270
Collectin subfamily member 12
Tissue enhanced
Detected in many
cartilage:
131.9
synovial tissue:
54.7
COLGALT1
ENSSSCG00000013883
ENSG00000130309
Collagen beta(1-O)galactosyltransferase 1
Low tissue specificity
Detected in all
COLGALT2
ENSSSCG00000030217
ENSG00000198756
Collagen beta(1-O)galactosyltransferase 2
Tissue enhanced
Detected in many
cartilage:
67.3
cornea:
37.8
COLQ
ENSSSCG00000028911
ENSG00000206561
Collagen like tail subunit of asymmetric acetylcholinesterase
Tissue enhanced
Detected in many
kidney:
19.9
COMMD1
ENSSSCG00000008376
ENSG00000173163
Copper metabolism domain containing 1
Tissue enhanced
Detected in all
lens:
50.1
COMMD10
ENSSSCG00000014223
ENSG00000145781
COMM domain-containing protein 10
Low tissue specificity
Detected in all
COMMD2
ENSSSCG00000011705
ENSG00000114744
COMM domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
35.9
COMMD3
ENSSSCG00000011082
ENSG00000148444
COMM domain containing 3
Low tissue specificity
Detected in all
COMMD4
ENSSSCG00000001884
ENSG00000140365
COMM domain containing 4
Low tissue specificity
Detected in all
COMMD5
ENSSSCG00000035123
ENSG00000170619
COMM domain containing 5
Low tissue specificity
Detected in all
COMMD6
ENSSSCG00000009464
ENSG00000136111
COMM domain-containing protein 6
Tissue enhanced
Detected in all
adrenal gland:
101.6
COMMD8
ENSSSCG00000033373
ENSG00000169019
COMM domain containing 8
Tissue enhanced
Detected in all
lens:
32.4
COMMD9
ENSSSCG00000013293
ENSG00000110442
COMM domain containing 9
Tissue enhanced
Detected in all
brain:
70.0
COMT
ENSSSCG00000010132
ENSG00000093010
Catechol O-methyltransferase
Tissue enhanced
Detected in all
liver:
118.4
COMTD1
ENSSSCG00000037237
ENSG00000165644
Catechol-O-methyltransferase domain containing 1
Low tissue specificity
Detected in all
COP1
ENSSSCG00000015509
ENSG00000143207
COP1, E3 ubiquitin ligase
Low tissue specificity
Detected in all
COPA
ENSSSCG00000006386
ENSG00000122218
Coatomer protein complex subunit alpha
Low tissue specificity
Detected in all
COPB1
ENSSSCG00000013392
ENSG00000129083
Coatomer subunit beta
Tissue enhanced
Detected in all
male glands:
88.3
COPB2
ENSSSCG00000011662
ENSG00000184432
Coatomer protein complex subunit beta 2
Tissue enhanced
Detected in all
male glands:
114.9
COPG1
ENSSSCG00000011616
ENSG00000181789
Coatomer protein complex subunit gamma 1
Low tissue specificity
Detected in all
COPG2
ENSSSCG00000016553
ENSG00000158623
Coatomer subunit gamma-2
Tissue enhanced
Detected in all
pituitary gland:
74.7
COPS2
ENSSSCG00000004652
ENSG00000166200
COP9 signalosome complex subunit 2
Low tissue specificity
Detected in all
COPS3
ENSSSCG00000018051
ENSG00000141030
COP9 signalosome complex subunit 3
Tissue enhanced
Detected in all
testis:
108.2
COPS5
ENSSSCG00000006203
ENSG00000121022
COP9 signalosome complex subunit 5
Tissue enhanced
Detected in all
lens:
53.4
COPS6
ENSSSCG00000034893
ENSG00000168090
COP9 signalosome complex subunit 6
Tissue enhanced
Detected in all
lens:
90.8
COPS7A
ENSSSCG00000000691
ENSG00000111652
COP9 signalosome subunit 7A
Low tissue specificity
Detected in all
COPS7B
ENSSSCG00000033334
ENSG00000144524
COP9 signalosome subunit 7B
Low tissue specificity
Detected in all
COPS8
ENSSSCG00000016323
ENSG00000198612
COP9 signalosome subunit 8
Low tissue specificity
Detected in all
COPZ1
ENSSSCG00000000290
ENSG00000111481
Coatomer protein complex subunit zeta 1
Tissue enhanced
Detected in all
male glands:
114.8
COPZ2
ENSSSCG00000017526
ENSG00000005243
Coatomer protein complex subunit zeta 2
Low tissue specificity
Detected in all
COQ10A
ENSSSCG00000025190
ENSG00000135469
Coenzyme Q10A
Tissue enhanced
Detected in many
heart:
21.6
skeletal muscle:
52.3
COQ10B
ENSSSCG00000016076
ENSG00000115520
Coenzyme Q10B
Low tissue specificity
Detected in all
COQ2
ENSSSCG00000009238
ENSG00000173085
Coenzyme Q2, polyprenyltransferase
Low tissue specificity
Detected in all
COQ4
ENSSSCG00000005646
ENSG00000167113
Coenzyme Q4
Low tissue specificity
Detected in all
COQ5
ENSSSCG00000009903
ENSG00000110871
Coenzyme Q5, methyltransferase
Low tissue specificity
Detected in all
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