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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14549 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CLIP1
ENSSSCG00000009793
ENSG00000130779
CAP-Gly domain containing linker protein 1
Low tissue specificity
Detected in all
CLIP4
ENSSSCG00000008535
ENSG00000115295
CAP-Gly domain containing linker protein family member 4
Tissue enhanced
Detected in many
testis:
43.0
vagus nerve:
34.0
CLK1
ENSSSCG00000016095
ENSG00000013441
Dual specificity protein kinase CLK1
Low tissue specificity
Detected in all
CLK2
ENSSSCG00000006519
ENSG00000176444
CDC like kinase 2
Low tissue specificity
Detected in all
CLK3
ENSSSCG00000001904
ENSG00000179335
CDC like kinase 3
Low tissue specificity
Detected in all
CLK4
ENSSSCG00000014028
ENSG00000113240
CDC like kinase 4
Low tissue specificity
Detected in all
CLMN
ENSSSCG00000002494
ENSG00000165959
Calmin (calponin-like, transmembrane)
Tissue enhanced
Detected in all
testis:
60.7
CLMP
ENSSSCG00000022961
ENSG00000166250
CXADR like membrane protein
Tissue enhanced
Detected in all
cervix:
64.3
CLN6
ENSSSCG00000004957
ENSG00000128973
Ceroid-lipofuscinosis neuronal protein 6
Low tissue specificity
Detected in all
CLNS1A
ENSSSCG00000014881
ENSG00000074201
Chloride nucleotide-sensitive channel 1A
Low tissue specificity
Detected in all
CLOCK
ENSSSCG00000008909
ENSG00000134852
Clock circadian regulator
Low tissue specificity
Detected in all
CLP1
ENSSSCG00000031442
ENSG00000172409
Cleavage and polyadenylation factor I subunit 1
Low tissue specificity
Detected in all
CLPB
ENSSSCG00000036887
ENSG00000162129
ClpB homolog, mitochondrial AAA ATPase chaperonin
Tissue enriched
Detected in all
testis:
84.4
CLPP
ENSSSCG00000038079
ENSG00000125656
Caseinolytic mitochondrial matrix peptidase proteolytic subunit
Low tissue specificity
Detected in all
CLPTM1
ENSSSCG00000003085
ENSG00000104853
CLPTM1, transmembrane protein
Low tissue specificity
Detected in all
CLPTM1L
ENSSSCG00000017119
ENSG00000049656
CLPTM1 like
Low tissue specificity
Detected in all
CLPX
ENSSSCG00000004927
ENSG00000166855
Caseinolytic mitochondrial matrix peptidase chaperone subunit
Low tissue specificity
Detected in all
CLRN3
ENSSSCG00000010753
ENSG00000180745
Clarin 3
Tissue enhanced
Detected in many
kidney:
21.1
large intestine:
34.6
small intestine:
28.1
CLSPN
ENSSSCG00000003628
ENSG00000092853
Claspin
Low tissue specificity
Detected in all
CLSTN1
ENSSSCG00000003396
ENSG00000171603
Calsyntenin 1
Tissue enhanced
Detected in all
brain:
86.7
CLSTN2
ENSSSCG00000011666
ENSG00000158258
Calsyntenin 2
Tissue enhanced
Detected in many
brain:
29.4
CLSTN3
ENSSSCG00000000672
ENSG00000139182
Calsyntenin 3
Group enriched
Detected in many
brain:
58.8
pineal gland:
44.5
CLTA
ENSSSCG00000037131
ENSG00000122705
Clathrin light chain A
Low tissue specificity
Detected in all
CLTB
ENSSSCG00000014058
ENSG00000175416
Clathrin light chain B
Low tissue specificity
Detected in all
CLU
ENSSSCG00000009668
ENSG00000120885
Clusterin Clusterin beta chain Clusterin alpha chain
Tissue enhanced
Detected in all
cartilage:
638.2
CLUAP1
ENSSSCG00000007955
ENSG00000103351
Clusterin-associated protein 1
Low tissue specificity
Detected in all
CLUH
ENSSSCG00000017835
ENSG00000132361
Clustered mitochondria homolog
Low tissue specificity
Detected in all
CLVS2
ENSSSCG00000004232
ENSG00000146352
Clavesin 2
Tissue enhanced
Detected in many
brain:
26.9
retina:
12.3
vagus nerve:
11.9
CLYBL
ENSSSCG00000009519
ENSG00000125246
Citrate lyase beta like
Tissue enhanced
Detected in all
choroid plexus:
31.8
CMAS
ENSSSCG00000034733
ENSG00000111726
Cytidine monophosphate N-acetylneuraminic acid synthetase
Low tissue specificity
Detected in all
CMBL
ENSSSCG00000039763
ENSG00000164237
Carboxymethylenebutenolidase homolog
Tissue enhanced
Detected in all
liver:
39.1
CMC2
ENSSSCG00000032060
ENSG00000103121
C-X9-C motif containing 2
Tissue enhanced
Detected in all
choroid plexus:
49.6
CMIP
ENSSSCG00000002689
ENSG00000153815
C-Maf inducing protein
Low tissue specificity
Detected in all
CMKLR1
ENSSSCG00000031346
ENSG00000174600
Chemokine-like receptor 1
Tissue enhanced
Detected in many
lymphoid tissue:
34.4
synovial tissue:
24.6
CMPK1
ENSSSCG00000003885
ENSG00000162368
Cytidine/uridine monophosphate kinase 1
Low tissue specificity
Detected in all
CMPK2
ENSSSCG00000008647
ENSG00000134326
Cytidine/uridine monophosphate kinase 2
Tissue enhanced
Detected in many
small intestine:
30.4
stomach:
30.7
CMSS1
ENSSSCG00000011970
ENSG00000184220
Cms1 ribosomal small subunit homolog (yeast)
Low tissue specificity
Detected in all
CMTM3
ENSSSCG00000038151
ENSG00000140931
CKLF like MARVEL transmembrane domain containing 3
Low tissue specificity
Detected in many
CMTM6
ENSSSCG00000038362
ENSG00000091317
CKLF like MARVEL transmembrane domain containing 6
Low tissue specificity
Detected in all
CMTM8
ENSSSCG00000022618
ENSG00000170293
CKLF like MARVEL transmembrane domain containing 8
Tissue enhanced
Detected in many
male glands:
57.0
CMTR1
ENSSSCG00000001579
ENSG00000137200
Cap methyltransferase 1
Low tissue specificity
Detected in all
CMTR2
ENSSSCG00000033156
ENSG00000180917
Cap methyltransferase 2
Low tissue specificity
Detected in all
CMYA5
ENSSSCG00000026098
ENSG00000164309
Cardiomyopathy-associated protein 5
Group enriched
Detected in some
heart:
72.9
skeletal muscle:
198.1
CNBP
ENSSSCG00000040879
ENSG00000169714
CCHC-type zinc finger nucleic acid binding protein
Low tissue specificity
Detected in all
CNDP2
ENSSSCG00000004870
ENSG00000133313
Cytosolic non-specific dipeptidase
Tissue enhanced
Detected in all
salivary gland:
76.0
CNEP1R1
ENSSSCG00000036005
ENSG00000205423
CTD nuclear envelope phosphatase 1 regulatory subunit 1
Low tissue specificity
Detected in all
CNGA4
ENSSSCG00000014630
ENSG00000132259
Cyclic nucleotide gated channel alpha 4
Tissue enhanced
Detected in many
mesothelial tissue:
7.2
CNIH1
ENSSSCG00000027256
ENSG00000100528
Protein cornichon homolog 1
Low tissue specificity
Detected in all
CNIH3
ENSSSCG00000034972
ENSG00000143786
Cornichon family AMPA receptor auxiliary protein 3
Tissue enhanced
Detected in many
adipose tissue:
19.9
brain:
20.2
pituitary gland:
21.4
CNIH4
ENSSSCG00000035034
ENSG00000143771
Cornichon family AMPA receptor auxiliary protein 4
Low tissue specificity
Detected in all
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