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UMAP gene cluster
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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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14549 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CFAP58
ENSSSCG00000010614
ENSG00000120051
Cilia and flagella associated protein 58
Tissue enhanced
Detected in many
choroid plexus:
23.8
fallopian tube:
22.9
testis:
19.2
CFAP70
ENSSSCG00000010298
ENSG00000156042
Cilia and flagella associated protein 70
Tissue enhanced
Detected in many
fallopian tube:
28.7
testis:
53.2
CFAP74
ENSSSCG00000030513
ENSG00000142609
Cilia and flagella associated protein 74
Tissue enhanced
Detected in many
kidney:
23.9
lung:
25.6
CFAP77
ENSSSCG00000005727
ENSG00000188523
Cilia and flagella associated protein 77
Tissue enhanced
Detected in all
fallopian tube:
26.7
upper respiratory system:
19.9
CFAP97
ENSSSCG00000015791
ENSG00000164323
Cilia and flagella associated protein 97
Tissue enriched
Detected in all
testis:
129.9
CFAP99
ENSSSCG00000034633
ENSG00000206113
Cilia and flagella associated protein 99
Low tissue specificity
Detected in all
CFD
ENSSSCG00000013418
ENSG00000197766
Complement factor D
Tissue enhanced
Detected in many
gallbladder:
125.8
small intestine:
98.3
stomach:
122.6
CFL1
ENSSSCG00000012974
Cofilin-1
Low tissue specificity
Detected in all
CFL2
ENSSSCG00000001959
ENSG00000165410
Cofilin-2
Tissue enhanced
Detected in all
skeletal muscle:
60.3
smooth muscle:
74.5
CFLAR
ENSSSCG00000016101
ENSG00000003402
CASP8 and FADD-like apoptosis regulator
Low tissue specificity
Detected in all
CGAS
ENSSSCG00000021383
ENSG00000164430
Cyclic GMP-AMP synthase
Tissue enhanced
Detected in all
lymphoid tissue:
24.0
CGGBP1
ENSSSCG00000032182
ENSG00000163320
CGG triplet repeat binding protein 1
Low tissue specificity
Detected in all
CGNL1
ENSSSCG00000035038
ENSG00000128849
Cingulin like 1
Tissue enhanced
Detected in many
kidney:
62.8
thyroid gland:
72.5
CGRRF1
ENSSSCG00000021451
ENSG00000100532
Cell growth regulator with ring finger domain 1
Low tissue specificity
Detected in all
CH25H
ENSSSCG00000010449
ENSG00000138135
Cholesterol 25-hydroxylase
Tissue enhanced
Detected in many
epididymis:
43.9
ovary:
26.5
CHAC1
ENSSSCG00000038521
ENSG00000128965
ChaC glutathione specific gamma-glutamylcyclotransferase 1
Tissue enhanced
Detected in all
skin:
29.2
CHAC2
ENSSSCG00000037577
ENSG00000143942
ChaC cation transport regulator homolog 2
Low tissue specificity
Detected in all
CHAF1A
ENSSSCG00000013509
ENSG00000167670
Chromatin assembly factor 1 subunit A
Tissue enhanced
Detected in all
testis:
28.8
CHAT
ENSSSCG00000010392
ENSG00000070748
Choline O-acetyltransferase
Tissue enhanced
Detected in all
brain:
14.4
cornea:
23.6
CHCHD1
ENSSSCG00000010308
ENSG00000172586
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
Low tissue specificity
Detected in all
CHCHD10
ENSSSCG00000010073
ENSG00000250479
Coiled-coil-helix-coiled-coil-helix domain containing 10
Tissue enhanced
Detected in all
heart:
175.7
skeletal muscle:
132.4
CHCHD4
ENSSSCG00000011604
ENSG00000163528
Mitochondrial intermembrane space import and assembly protein 40
Low tissue specificity
Detected in all
CHCHD5
ENSSSCG00000008094
ENSG00000125611
Coiled-coil-helix-coiled-coil-helix domain containing 5
Tissue enhanced
Detected in all
lens:
70.4
testis:
52.8
CHD1
ENSSSCG00000014177
ENSG00000153922
Chromodomain helicase DNA binding protein 1
Low tissue specificity
Detected in all
CHD1L
ENSSSCG00000006701
ENSG00000131778
Chromodomain helicase DNA binding protein 1 like
Low tissue specificity
Detected in all
CHD2
ENSSSCG00000002266
ENSG00000173575
Chromodomain helicase DNA binding protein 2
Low tissue specificity
Detected in all
CHD3
ENSSSCG00000021363
ENSG00000170004
Chromodomain helicase DNA binding protein 3
Low tissue specificity
Detected in all
CHD4
ENSSSCG00000000697
ENSG00000111642
Chromodomain helicase DNA binding protein 4
Low tissue specificity
Detected in all
CHD6
ENSSSCG00000007360
ENSG00000124177
Chromodomain helicase DNA binding protein 6
Low tissue specificity
Detected in all
CHD7
ENSSSCG00000006231
ENSG00000171316
Chromodomain helicase DNA binding protein 7
Low tissue specificity
Detected in all
CHD8
ENSSSCG00000002127
ENSG00000100888
Chromodomain helicase DNA binding protein 8
Low tissue specificity
Detected in all
CHD9
ENSSSCG00000033591
ENSG00000177200
Chromodomain helicase DNA binding protein 9
Low tissue specificity
Detected in all
CHEK2
ENSSSCG00000034864
ENSG00000183765
Serine/threonine-protein kinase Chk2
Low tissue specificity
Detected in all
CHERP
ENSSSCG00000013860
ENSG00000085872
Calcium homeostasis endoplasmic reticulum protein
Low tissue specificity
Detected in all
CHFR
ENSSSCG00000009732
ENSG00000072609
Checkpoint with forkhead and ring finger domains
Low tissue specificity
Detected in all
CHI3L2
ENSSSCG00000006796
ENSG00000064886
Chitinase 3 like 2
Low tissue specificity
Detected in all
CHIC1
ENSSSCG00000012416
ENSG00000204116
Cysteine rich hydrophobic domain 1
Low tissue specificity
Detected in many
CHIC2
ENSSSCG00000032645
ENSG00000109220
Cysteine rich hydrophobic domain 2
Tissue enhanced
Detected in all
lymphoid tissue:
39.5
CHID1
ENSSSCG00000012837
ENSG00000177830
Chitinase domain-containing protein 1 precursor
Low tissue specificity
Detected in all
CHKA
ENSSSCG00000012889
ENSG00000110721
Choline kinase alpha
Tissue enhanced
Detected in all
male glands:
41.6
CHKB
ENSSSCG00000036154
ENSG00000100288
Choline/ethanolamine kinase
Low tissue specificity
Detected in all
CHL1
ENSSSCG00000011524
ENSG00000134121
Cell adhesion molecule L1 like
Tissue enhanced
Detected in many
brain:
47.4
pineal gland:
36.4
vagus nerve:
36.8
CHM
ENSSSCG00000012463
ENSG00000188419
CHM, Rab escort protein 1
Tissue enhanced
Detected in all
lens:
51.9
CHMP1A
ENSSSCG00000023677
ENSG00000131165
Charged multivesicular body protein 1a
Low tissue specificity
Detected in all
CHMP2A
ENSSSCG00000029362
ENSG00000130724
Charged multivesicular body protein 2A
Low tissue specificity
Detected in all
CHMP2B
ENSSSCG00000011997
ENSG00000083937
Charged multivesicular body protein 2b
Low tissue specificity
Detected in all
CHMP4A
ENSSSCG00000033432
ENSG00000254505
Charged multivesicular body protein 4A
Low tissue specificity
Detected in many
CHMP4B
ENSSSCG00000007272
ENSG00000101421
Charged multivesicular body protein 4B
Low tissue specificity
Detected in all
CHMP4C
ENSSSCG00000025980
ENSG00000164695
Charged multivesicular body protein 4c
Low tissue specificity
Detected in all
CHMP5
ENSSSCG00000010995
ENSG00000086065
Charged multivesicular body protein 5
Low tissue specificity
Detected in all
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