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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14549 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CCL16
ENSSSCG00000040940
ENSG00000275152
C-C motif chemokine ligand 16
Tissue enriched
Detected in many
liver:
145.0
CCL19
ENSSSCG00000010966
ENSG00000172724
C-C motif chemokine 19 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
113.4
CCL2
ENSSSCG00000017723
ENSG00000108691
C-C motif chemokine 2
Tissue enhanced
Detected in many
aorta:
52.5
ovary:
88.5
CCL20
ENSSSCG00000016254
ENSG00000115009
C-C motif chemokine 20 precursor
Tissue enhanced
Detected in all
adrenal gland:
29.1
lymphoid tissue:
26.2
CCL21
ENSSSCG00000038162
ENSG00000137077
C-C motif chemokine 21 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
111.9
ovary:
39.7
CCL26
ENSSSCG00000039874
ENSG00000006606
C-C motif chemokine 26 precursor
Tissue enhanced
Detected in many
cartilage:
27.6
CCL5
ENSSSCG00000017705
ENSG00000271503
C-C motif chemokine 5 precursor
Tissue enhanced
Detected in many
large intestine:
83.3
small intestine:
60.4
stomach:
49.5
CCM2
ENSSSCG00000016734
ENSG00000136280
CCM2 scaffolding protein
Tissue enhanced
Detected in all
lens:
84.1
CCM2L
ENSSSCG00000007239
ENSG00000101331
CCM2 like scaffolding protein
Low tissue specificity
Detected in all
CCNB1
ENSSSCG00000029326
ENSG00000134057
G2/mitotic-specific cyclin-B1
Low tissue specificity
Detected in all
CCNB1IP1
ENSSSCG00000002144
ENSG00000100814
Cyclin B1 interacting protein 1
Low tissue specificity
Detected in all
CCNB3
ENSSSCG00000012307
ENSG00000147082
Cyclin B3
Low tissue specificity
Detected in all
CCND1
ENSSSCG00000037900
ENSG00000110092
Cyclin D1
Low tissue specificity
Detected in many
CCND2
ENSSSCG00000038694
ENSG00000118971
G1/S-specific cyclin-D2
Low tissue specificity
Detected in all
CCND3
ENSSSCG00000032284
ENSG00000112576
G1/S-specific cyclin-D3
Low tissue specificity
Detected in all
CCNDBP1
ENSSSCG00000034771
ENSG00000166946
Cyclin D1 binding protein 1
Low tissue specificity
Detected in all
CCNE2
ENSSSCG00000006095
ENSG00000175305
G1/S-specific cyclin-E2
Tissue enhanced
Detected in all
lymphoid tissue:
28.4
CCNF
ENSSSCG00000026326
ENSG00000162063
Cyclin F
Tissue enhanced
Detected in many
epididymis:
32.5
lymphoid tissue:
15.4
CCNG1
ENSSSCG00000017024
ENSG00000113328
Cyclin-G1
Tissue enriched
Detected in all
lens:
343.5
CCNG2
ENSSSCG00000008988
ENSG00000138764
Cyclin G2
Tissue enhanced
Detected in all
brain:
47.2
CCNH
ENSSSCG00000014147
ENSG00000134480
Cyclin-H
Low tissue specificity
Detected in all
CCNI
ENSSSCG00000008987
ENSG00000118816
Cyclin I
Low tissue specificity
Detected in all
CCNJ
ENSSSCG00000010502
ENSG00000107443
Cyclin J
Low tissue specificity
Detected in all
CCNK
ENSSSCG00000002509
ENSG00000090061
Cyclin K
Low tissue specificity
Detected in all
CCNL1
ENSSSCG00000029352
ENSG00000163660
Cyclin L1
Low tissue specificity
Detected in all
CCNL2
ENSSSCG00000003354
ENSG00000221978
Cyclin L2
Low tissue specificity
Detected in all
CCNQ
ENSSSCG00000012770
ENSG00000262919
Cyclin Q
Low tissue specificity
Detected in all
CCNT1
ENSSSCG00000038181
ENSG00000129315
Cyclin T1
Low tissue specificity
Detected in all
CCNY
ENSSSCG00000011107
ENSG00000108100
Cyclin-Y
Tissue enhanced
Detected in all
testis:
85.7
CCP110
ENSSSCG00000023829
ENSG00000103540
Centriolar coiled-coil protein 110
Tissue enhanced
Detected in all
brain:
59.4
CCPG1
ENSSSCG00000004610
ENSG00000260916
Cell cycle progression protein 1
Low tissue specificity
Detected in all
CCR1
ENSSSCG00000011322
ENSG00000163823
C-C chemokine receptor type 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.0
CCR10
ENSSSCG00000017392
ENSG00000184451
C-C chemokine receptor type 10
Low tissue specificity
Detected in all
CCR2
ENSSSCG00000024311
ENSG00000121807
C-C chemokine receptor type 2
Tissue enhanced
Detected in many
ovary:
15.6
CCR4
ENSSSCG00000034660
ENSG00000183813
C-C motif chemokine receptor 4
Tissue enhanced
Detected in many
lymphoid tissue:
16.6
testis:
17.2
CCR7
ENSSSCG00000017466
ENSG00000126353
C-C motif chemokine receptor 7
Tissue enriched
Detected in many
lymphoid tissue:
42.2
CCR8
ENSSSCG00000025846
ENSG00000179934
C-C motif chemokine receptor 8
Low tissue specificity
Detected in all
CCRL2
ENSSSCG00000023557
ENSG00000121797
Chemokine C-C motif receptor-like 2
Low tissue specificity
Detected in many
CCS
ENSSSCG00000012934
ENSG00000173992
Copper chaperone for superoxide dismutase
Low tissue specificity
Detected in all
CCSAP
ENSSSCG00000023776
ENSG00000154429
Centriole, cilia and spindle associated protein
Tissue enhanced
Detected in many
brain:
31.4
CCSER1
ENSSSCG00000022986
ENSG00000184305
Coiled-coil serine rich protein 1
Tissue enhanced
Detected in many
choroid plexus:
77.7
CCSER2
ENSSSCG00000010351
ENSG00000107771
Coiled-coil serine rich protein 2
Low tissue specificity
Detected in all
CCT2
ENSSSCG00000000496
ENSG00000166226
T-complex protein 1 subunit beta
Tissue enhanced
Detected in all
lens:
68.1
CCT3
ENSSSCG00000006487
ENSG00000163468
T-complex protein 1 subunit gamma
Tissue enhanced
Detected in all
lens:
89.6
CCT4
ENSSSCG00000008377
ENSG00000115484
Chaperonin containing TCP1 subunit 4
Low tissue specificity
Detected in all
CCT5
ENSSSCG00000024126
ENSG00000150753
T-complex protein 1 subunit epsilon
Low tissue specificity
Detected in all
CCT7
ENSSSCG00000008303
ENSG00000135624
T-complex protein 1 subunit eta
Tissue enhanced
Detected in all
lens:
50.3
CCT8
ENSSSCG00000026761
ENSG00000156261
Chaperonin containing TCP1 subunit 8
Low tissue specificity
Detected in all
CD109
ENSSSCG00000004485
ENSG00000156535
CD109 molecule
Tissue enhanced
Detected in all
cartilage:
56.8
cornea:
44.6
CD14
ENSSSCG00000014369
ENSG00000170458
Monocyte differentiation antigen CD14 precursor
Tissue enhanced
Detected in all
liver:
74.2
synovial tissue:
43.7
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