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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14937 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LGALS12
ENSSSCG00000013056
ENSG00000133317
Galectin-12
Tissue enhanced
Detected in all
adipose tissue:
46.2
LGALS2
ENSSSCG00000021728
ENSG00000100079
Galectin-2
Tissue enriched
Detected in some
gallbladder:
273.1
LGALS3
ENSSSCG00000005055
ENSG00000131981
Galectin-3
Tissue enhanced
Detected in many
large intestine:
168.2
lens:
152.6
LGALS3BP
ENSSSCG00000036383
ENSG00000108679
Galectin 3 binding protein
Low tissue specificity
Detected in all
LGALS8
ENSSSCG00000010146
ENSG00000116977
Galectin-8
Low tissue specificity
Detected in all
LGALSL
ENSSSCG00000030005
ENSG00000119862
Galectin like
Tissue enhanced
Detected in all
cornea:
62.3
LGI1
ENSSSCG00000010481
ENSG00000108231
Leucine rich glioma inactivated 1
Low tissue specificity
Detected in all
LGI4
ENSSSCG00000025126
ENSG00000153902
Leucine rich repeat LGI family member 4
Tissue enhanced
Detected in many
vagus nerve:
94.2
LGMN
ENSSSCG00000002452
ENSG00000100600
Legumain
Tissue enhanced
Detected in all
kidney:
124.7
synovial tissue:
131.5
LGR4
ENSSSCG00000013335
ENSG00000205213
Leucine rich repeat containing G protein-coupled receptor 4
Tissue enhanced
Detected in many
stomach:
54.0
LHFPL2
ENSSSCG00000028536
ENSG00000145685
Lipoma HMGIC fusion partner-like 2 protein
Tissue enhanced
Detected in all
ovary:
66.1
LHFPL6
ENSSSCG00000029855
ENSG00000183722
LHFPL tetraspan subfamily member 6
Tissue enhanced
Detected in all
cervix:
76.3
LHPP
ENSSSCG00000010735
ENSG00000107902
Phospholysine phosphohistidine inorganic pyrophosphate phosphatase
Low tissue specificity
Detected in all
LHX5
ENSSSCG00000009869
ENSG00000089116
LIM homeobox 5
Low tissue specificity
Detected in many
LIAS
ENSSSCG00000029385
ENSG00000121897
Lipoyl synthase, mitochondrial
Low tissue specificity
Detected in all
LIFR
ENSSSCG00000016850
ENSG00000113594
LIF receptor alpha
Low tissue specificity
Detected in all
LIG1
ENSSSCG00000003128
ENSG00000105486
DNA ligase 1
Low tissue specificity
Detected in all
LIG3
ENSSSCG00000024770
ENSG00000005156
DNA ligase 3
Low tissue specificity
Detected in all
LIG4
ENSSSCG00000009540
ENSG00000174405
DNA ligase 4
Low tissue specificity
Detected in all
LIMA1
ENSSSCG00000032269
ENSG00000050405
LIM domain and actin-binding protein 1
Low tissue specificity
Detected in all
LIMCH1
ENSSSCG00000008799
ENSG00000064042
LIM and calponin homology domains 1
Tissue enhanced
Detected in all
vagus nerve:
77.2
LIMD1
ENSSSCG00000011313
ENSG00000144791
LIM domains containing 1
Low tissue specificity
Detected in all
LIMD2
ENSSSCG00000040509
ENSG00000136490
LIM domain-containing protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
LIMK1
ENSSSCG00000030378
ENSG00000106683
LIM domain kinase 1
Tissue enhanced
Detected in all
cartilage:
57.1
LIMK2
ENSSSCG00000010025
ENSG00000182541
LIM domain kinase 2
Low tissue specificity
Detected in all
LIMS2
ENSSSCG00000015862
ENSG00000072163
LIM zinc finger domain containing 2
Tissue enhanced
Detected in many
smooth muscle:
121.2
LIN52
ENSSSCG00000027564
ENSG00000205659
Protein lin-52 homolog
Low tissue specificity
Detected in all
LIN54
ENSSSCG00000009242
ENSG00000189308
Lin-54 DREAM MuvB core complex component
Low tissue specificity
Detected in all
LIN7A
ENSSSCG00000040348
ENSG00000111052
Lin-7 homolog A, crumbs cell polarity complex component
Tissue enhanced
Detected in all
testis:
45.9
LIN7B
ENSSSCG00000003157
ENSG00000104863
Protein lin-7 homolog B
Tissue enhanced
Detected in all
brain:
26.5
lens:
21.6
LIN7C
ENSSSCG00000022806
ENSG00000148943
Lin-7 homolog C, crumbs cell polarity complex component
Low tissue specificity
Detected in all
LINS1
ENSSSCG00000004820
ENSG00000140471
Lines homolog 1
Tissue enhanced
Detected in all
lens:
41.4
LIPA
ENSSSCG00000010450
ENSG00000107798
Lysosomal acid lipase/cholesteryl ester hydrolase precursor
Tissue enhanced
Detected in all
ovary:
84.6
LIPC
ENSSSCG00000004596
ENSG00000166035
Hepatic triacylglycerol lipase precursor
Group enriched
Detected in all
liver:
58.1
small intestine:
22.1
LIPG
ENSSSCG00000004509
ENSG00000101670
Endothelial lipase precursor
Tissue enhanced
Detected in all
adrenal gland:
49.3
ovary:
56.0
LIPH
ENSSSCG00000011793
ENSG00000163898
Lipase H
Tissue enhanced
Detected in many
ovary:
13.1
stomach:
28.9
LIPI
ENSSSCG00000012004
ENSG00000188992
Lipase I
Low tissue specificity
Detected in all
LIPN
ENSSSCG00000031373
ENSG00000204020
Lipase family member N
Low tissue specificity
Detected in all
LIPT1
ENSSSCG00000034715
ENSG00000144182
Lipoyltransferase 1
Low tissue specificity
Detected in all
LIPT2
ENSSSCG00000024060
ENSG00000175536
Lipoyl(octanoyl) transferase 2
Low tissue specificity
Detected in all
LITAF
ENSSSCG00000032381
ENSG00000189067
Lipopolysaccharide induced TNF factor
Tissue enhanced
Detected in all
ovary:
46.1
LIX1L
ENSSSCG00000026502
ENSG00000271601
Limb and CNS expressed 1 like
Low tissue specificity
Detected in all
LLGL1
ENSSSCG00000040859
ENSG00000131899
LLGL1, scribble cell polarity complex component
Tissue enhanced
Detected in all
brain:
44.4
LLGL2
ENSSSCG00000033518
ENSG00000073350
LLGL2, scribble cell polarity complex component
Low tissue specificity
Detected in many
LMAN1
ENSSSCG00000004908
ENSG00000074695
Lectin, mannose binding 1
Tissue enhanced
Detected in all
male glands:
69.5
LMAN1L
ENSSSCG00000001899
ENSG00000140506
Lectin, mannose binding 1 like
Group enriched
Detected in some
esophagus:
79.5
male glands:
267.8
salivary gland:
90.9
LMAN2
ENSSSCG00000014040
ENSG00000169223
Lectin, mannose binding 2
Tissue enhanced
Detected in all
epididymis:
93.5
LMAN2L
ENSSSCG00000026939
ENSG00000114988
VIP36-like protein precursor
Low tissue specificity
Detected in all
LMBR1
ENSSSCG00000016412
ENSG00000105983
Limb development membrane protein 1
Low tissue specificity
Detected in all
LMBR1L
ENSSSCG00000000189
ENSG00000139636
Limb development membrane protein 1 like
Low tissue specificity
Detected in all
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