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UMAP gene cluster
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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15625 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
IFT122
ENSSSCG00000011589
ENSG00000163913
Intraflagellar transport 122
Low tissue specificity
Detected in all
IFT140
ENSSSCG00000008020
ENSG00000187535
Intraflagellar transport 140
Low tissue specificity
Detected in all
IFT172
ENSSSCG00000026367
ENSG00000138002
Intraflagellar transport 172
Low tissue specificity
Detected in all
IFT22
ENSSSCG00000007679
ENSG00000128581
Intraflagellar transport 22
Low tissue specificity
Detected in all
IFT27
ENSSSCG00000000139
ENSG00000100360
Intraflagellar transport 27
Low tissue specificity
Detected in all
IFT43
ENSSSCG00000002386
ENSG00000119650
Intraflagellar transport 43
Low tissue specificity
Detected in all
IFT46
ENSSSCG00000029649
ENSG00000118096
Intraflagellar transport 46
Low tissue specificity
Detected in all
IFT52
ENSSSCG00000007364
ENSG00000101052
Intraflagellar transport 52
Low tissue specificity
Detected in all
IFT57
ENSSSCG00000011941
ENSG00000114446
Intraflagellar transport 57
Tissue enhanced
Detected in all
lens:
117.6
IFT74
ENSSSCG00000005124
ENSG00000096872
Intraflagellar transport 74
Tissue enhanced
Detected in all
testis:
31.5
IFT80
ENSSSCG00000011733
ENSG00000068885
Intraflagellar transport 80
Low tissue specificity
Detected in all
IFT81
ENSSSCG00000009818
ENSG00000122970
Intraflagellar transport 81
Low tissue specificity
Detected in all
IFT88
ENSSSCG00000009270
ENSG00000032742
Intraflagellar transport 88
Low tissue specificity
Detected in all
IGDCC3
ENSSSCG00000004932
ENSG00000174498
Immunoglobulin superfamily DCC subclass member 3
Tissue enhanced
Detected in many
brain:
12.9
lymphoid tissue:
13.1
IGDCC4
ENSSSCG00000004931
ENSG00000103742
Immunoglobulin superfamily DCC subclass member 4
Tissue enhanced
Detected in many
adrenal gland:
39.0
IGF1
ENSSSCG00000000857
ENSG00000017427
Insulin-like growth factor I precursor
Tissue enhanced
Detected in many
adipose tissue:
73.1
IGF2BP2
ENSSSCG00000011795
ENSG00000073792
Insulin like growth factor 2 mRNA binding protein 2
Low tissue specificity
Detected in all
IGF2BP3
ENSSSCG00000036695
ENSG00000136231
Insulin like growth factor 2 mRNA binding protein 3
Low tissue specificity
Detected in all
IGF2R
ENSSSCG00000004044
ENSG00000197081
Cation-independent mannose-6-phosphate receptor precursor
Low tissue specificity
Detected in all
IGFBP2
ENSSSCG00000035392
ENSG00000115457
Insulin-like growth factor-binding protein 2
Tissue enhanced
Detected in many
choroid plexus:
61.1
cornea:
73.1
liver:
114.0
IGFBP3
ENSSSCG00000038783
ENSG00000146674
Insulin-like growth factor-binding protein 3
Tissue enhanced
Detected in many
upper respiratory system:
84.2
urinary bladder:
77.7
IGFBP4
ENSSSCG00000017472
ENSG00000141753
Insulin-like growth factor-binding protein 4 precursor
Tissue enhanced
Detected in many
ovary:
147.0
IGFBP5
ENSSSCG00000025924
ENSG00000115461
Insulin-like growth factor-binding protein 5 precursor
Tissue enhanced
Detected in all
cartilage:
254.5
cervix:
156.6
IGFBP6
ENSSSCG00000000261
ENSG00000167779
Insulin-like growth factor-binding protein 6 precursor
Tissue enhanced
Detected in many
cornea:
61.7
dura mater:
86.9
IGFBP7
ENSSSCG00000008913
ENSG00000163453
Insulin-like growth factor-binding protein 7 precursor
Low tissue specificity
Detected in all
IGFBPL1
ENSSSCG00000005360
ENSG00000137142
Insulin like growth factor binding protein like 1
Tissue enhanced
Detected in some
brain:
7.4
lymphoid tissue:
12.8
small intestine:
8.5
upper respiratory system:
5.5
IGHMBP2
ENSSSCG00000012878
ENSG00000132740
Immunoglobulin mu binding protein 2
Low tissue specificity
Detected in all
IGSF1
ENSSSCG00000012667
ENSG00000147255
Immunoglobulin superfamily member 1
Tissue enriched
Detected in some
pituitary gland:
94.6
IGSF11
ENSSSCG00000011906
ENSG00000144847
Immunoglobulin superfamily member 11
Tissue enhanced
Detected in many
brain:
36.0
retina:
13.2
vagus nerve:
14.8
IGSF3
ENSSSCG00000006737
ENSG00000143061
Immunoglobulin superfamily member 3
Low tissue specificity
Detected in all
IGSF5
ENSSSCG00000012071
ENSG00000183067
Immunoglobulin superfamily member 5
Low tissue specificity
Detected in all
IGSF6
ENSSSCG00000027967
ENSG00000140749
Immunoglobulin superfamily member 6
Low tissue specificity
Detected in all
IGSF8
ENSSSCG00000006392
ENSG00000162729
Immunoglobulin superfamily member 8
Tissue enhanced
Detected in all
brain:
37.3
IGSF9
ENSSSCG00000006396
ENSG00000085552
Immunoglobulin superfamily member 9
Tissue enhanced
Detected in all
epididymis:
38.3
stomach:
38.5
IGSF9B
ENSSSCG00000015255
ENSG00000080854
Immunoglobulin superfamily member 9B
Tissue enhanced
Detected in many
brain:
28.1
cervix:
26.6
IHH
ENSSSCG00000016204
ENSG00000163501
Indian hedgehog protein precursor
Tissue enhanced
Detected in all
gallbladder:
28.2
large intestine:
31.5
stomach:
38.3
IK
ENSSSCG00000014372
ENSG00000113141
IK cytokine
Low tissue specificity
Detected in all
IKBIP
ENSSSCG00000038772
ENSG00000166130
Inhibitor of nuclear factor kappa-B kinase-interacting protein
Low tissue specificity
Detected in all
IKBKB
ENSSSCG00000007030
ENSG00000104365
Inhibitor of nuclear factor kappa-B kinase subunit beta
Low tissue specificity
Detected in all
IKBKE
ENSSSCG00000015644
ENSG00000263528
Inhibitor of nuclear factor kappa B kinase subunit epsilon
Tissue enhanced
Detected in many
lymphoid tissue:
23.4
stomach:
34.5
IKBKG
ENSSSCG00000012825
ENSG00000269335
NF-kappa-B essential modulator
Low tissue specificity
Detected in all
IKZF2
ENSSSCG00000016164
ENSG00000030419
IKAROS family zinc finger 2
Tissue enhanced
Detected in many
lymphoid tissue:
50.2
IKZF4
ENSSSCG00000031139
ENSG00000123411
IKAROS family zinc finger 4
Low tissue specificity
Detected in all
IKZF5
ENSSSCG00000023565
ENSG00000095574
IKAROS family zinc finger 5
Low tissue specificity
Detected in all
IL10RA
ENSSSCG00000015085
ENSG00000110324
Interleukin 10 receptor subunit alpha
Tissue enhanced
Detected in many
lymphoid tissue:
47.1
IL10RB
ENSSSCG00000036556
ENSG00000159110,ENSG00000249624
Interferon alpha/beta receptor 2
Low tissue specificity
Detected in all
IL11RA
ENSSSCG00000010968
ENSG00000137070
Interleukin 11 receptor subunit alpha
Low tissue specificity
Detected in all
IL12RB1
ENSSSCG00000013894
ENSG00000096996
Interleukin-12 receptor subunit beta-1 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
25.4
IL12RB2
ENSSSCG00000003799
ENSG00000081985
Interleukin-12 receptor subunit beta-2 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
38.6
IL13
ENSSSCG00000014281
ENSG00000169194
Interleukin-13
Tissue enhanced
Detected in many
testis:
6.9
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