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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15648 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
UXS1
ENSSSCG00000008143
ENSG00000115652
UDP-glucuronic acid decarboxylase 1 isoform a
Low tissue specificity
Detected in all
UXT
ENSSSCG00000012280
ENSG00000126756
Ubiquitously expressed prefoldin like chaperone
Tissue enhanced
Detected in all
male glands:
42.0
VAC14
ENSSSCG00000002729
ENSG00000103043
Vac14, PIKFYVE complex component
Low tissue specificity
Detected in all
VAMP1
ENSSSCG00000000703
ENSG00000139190
Vesicle associated membrane protein 1
Tissue enriched
Detected in many
brain:
145.7
VAMP3
ENSSSCG00000035376
ENSG00000049245
Vesicle associated membrane protein 3
Low tissue specificity
Detected in all
VAMP4
ENSSSCG00000015482
ENSG00000117533
Vesicle-associated membrane protein 4
Low tissue specificity
Detected in all
VAMP5
ENSSSCG00000033135
ENSG00000168899
Vesicle associated membrane protein 5
Low tissue specificity
Detected in all
VAMP7
ENSSSCG00000029615
ENSG00000124333
Vesicle-associated membrane protein 7
Low tissue specificity
Detected in all
VAMP8
ENSSSCG00000022820
ENSG00000118640
Vesicle associated membrane protein 8
Low tissue specificity
Detected in all
VANGL1
ENSSSCG00000006746
ENSG00000173218
VANGL planar cell polarity protein 1
Low tissue specificity
Detected in all
VANGL2
ENSSSCG00000006383
ENSG00000162738
VANGL planar cell polarity protein 2
Low tissue specificity
Detected in many
VAPA
ENSSSCG00000038465
ENSG00000101558
VAMP associated protein A
Tissue enhanced
Detected in all
skeletal muscle:
82.1
VAPB
ENSSSCG00000007514
ENSG00000124164
Vesicle-associated membrane protein-associated protein B
Low tissue specificity
Detected in all
VARS
ENSSSCG00000038950
ENSG00000204394
Valine--tRNA ligase
Tissue enriched
Detected in all
testis:
76.7
VARS2
ENSSSCG00000001384
ENSG00000137411
Valine--tRNA ligase, mitochondrial precursor
Low tissue specificity
Detected in all
VASH1
ENSSSCG00000002389
ENSG00000071246
Vasohibin 1
Tissue enhanced
Detected in all
lymphoid tissue:
28.1
VASH2
ENSSSCG00000015589
ENSG00000143494
Vasohibin 2
Tissue enhanced
Detected in many
testis:
40.0
VASN
ENSSSCG00000025561
ENSG00000168140
Vasorin
Low tissue specificity
Detected in many
VASP
ENSSSCG00000036317
ENSG00000125753
Vasodilator stimulated phosphoprotein
Low tissue specificity
Detected in all
VAT1
ENSSSCG00000024059
ENSG00000108828
Vesicle amine transport 1
Low tissue specificity
Detected in all
VAT1L
ENSSSCG00000002696
ENSG00000171724
Vesicle amine transport 1 like
Group enriched
Detected in many
adrenal gland:
98.1
brain:
32.7
choroid plexus:
77.6
ovary:
32.6
VAV1
ENSSSCG00000013553
ENSG00000141968
Proto-oncogene vav
Tissue enhanced
Detected in many
lymphoid tissue:
56.6
VAV2
ENSSSCG00000005743
ENSG00000160293
Vav guanine nucleotide exchange factor 2
Low tissue specificity
Detected in many
VCAM1
ENSSSCG00000006862
ENSG00000162692
Vascular cell adhesion protein 1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
VCAN
ENSSSCG00000014136
ENSG00000038427
Versican core protein precursor
Tissue enhanced
Detected in all
ovary:
100.4
VCL
ENSSSCG00000010313
ENSG00000035403
Vinculin
Tissue enhanced
Detected in all
smooth muscle:
130.6
VCP
ENSSSCG00000005300
ENSG00000165280
Transitional endoplasmic reticulum ATPase
Low tissue specificity
Detected in all
VCPIP1
ENSSSCG00000006209
ENSG00000175073
Valosin containing protein interacting protein 1
Tissue enhanced
Detected in all
lens:
48.5
VCPKMT
ENSSSCG00000036735
ENSG00000100483
Valosin containing protein lysine methyltransferase
Low tissue specificity
Detected in all
VDAC3
ENSSSCG00000007026
ENSG00000078668
Voltage-dependent anion-selective channel protein 3
Tissue enhanced
Detected in all
skeletal muscle:
79.2
testis:
70.9
VEGFA
ENSSSCG00000001695
ENSG00000112715
Vascular endothelial growth factor A precursor
Tissue enhanced
Detected in all
thyroid gland:
94.9
VEGFB
ENSSSCG00000013037
ENSG00000173511
Vascular endothelial growth factor B
Low tissue specificity
Detected in all
VEZF1
ENSSSCG00000017623
ENSG00000136451
Vascular endothelial zinc finger 1
Low tissue specificity
Detected in all
VEZT
ENSSSCG00000000900
ENSG00000028203
Vezatin, adherens junctions transmembrane protein
Low tissue specificity
Detected in all
VGF
ENSSSCG00000039053
ENSG00000128564
VGF nerve growth factor inducible
Group enriched
Detected in some
pineal gland:
190.9
pituitary gland:
51.7
VGLL1
ENSSSCG00000025438
ENSG00000102243
Vestigial like family member 1
Low tissue specificity
Detected in all
VGLL4
ENSSSCG00000030581
ENSG00000144560
Vestigial like family member 4
Low tissue specificity
Detected in all
VIM
ENSSSCG00000011033
ENSG00000026025
Vimentin
Tissue enhanced
Detected in all
lens:
729.5
VIPAS39
ENSSSCG00000002403
ENSG00000151445
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Low tissue specificity
Detected in all
VIPR1
ENSSSCG00000011280
ENSG00000114812
Vasoactive intestinal polypeptide receptor 1 precursor
Tissue enhanced
Detected in all
male glands:
92.6
VIPR2
ENSSSCG00000016403
ENSG00000106018
Vasoactive intestinal polypeptide receptor 2 precursor
Tissue enhanced
Detected in many
mesothelial tissue:
50.2
VIRMA
ENSSSCG00000006100
ENSG00000164944
Vir like m6A methyltransferase associated
Low tissue specificity
Detected in all
VIT
ENSSSCG00000008501
ENSG00000205221
Vitrin
Group enriched
Detected in many
cartilage:
112.4
lens:
52.1
VKORC1
ENSSSCG00000035364
ENSG00000167397
Vitamin K epoxide reductase complex subunit 1
Low tissue specificity
Detected in all
VLDLR
ENSSSCG00000005229
ENSG00000147852
Very low-density lipoprotein receptor precursor
Tissue enhanced
Detected in all
ovary:
56.7
VMO1
ENSSSCG00000017915
ENSG00000182853
Vitelline membrane outer layer protein 1 homolog precursor
Group enriched
Detected in many
salivary gland:
21.5
upper respiratory system:
61.2
VMP1
ENSSSCG00000017668
ENSG00000062716
Vacuole membrane protein 1
Tissue enhanced
Detected in all
ovary:
100.7
VOPP1
ENSSSCG00000032734
ENSG00000154978
VOPP1, WBP1/VOPP1 family member
Tissue enhanced
Detected in many
retina:
73.7
VPS11
ENSSSCG00000015107
ENSG00000160695
VPS11, CORVET/HOPS core subunit
Low tissue specificity
Detected in all
VPS13B
ENSSSCG00000006071
ENSG00000132549
Vacuolar protein sorting 13 homolog B
Low tissue specificity
Detected in all
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