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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15648 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C6orf222
ENSSSCG00000001560
ENSG00000189325
Chromosome 6 open reading frame 222
Low tissue specificity
Detected in all
C6orf52
ENSSSCG00000001040
ENSG00000137434
Chromosome 6 open reading frame 52
Low tissue specificity
Detected in all
C6orf58
ENSSSCG00000004212
ENSG00000184530
Chromosome 6 open reading frame 58
Tissue enhanced
Detected in many
esophagus:
34.2
upper respiratory system:
15.1
C6orf62
ENSSSCG00000038752
ENSG00000112308
Chromosome 6 open reading frame 62
Low tissue specificity
Detected in all
C6orf89
ENSSSCG00000035341
ENSG00000198663
Chromosome 6 open reading frame 89
Low tissue specificity
Detected in all
C7
ENSSSCG00000016859
ENSG00000112936
Complement component C7 precursor
Tissue enhanced
Detected in many
gallbladder:
59.4
heart:
46.0
lymphoid tissue:
47.5
small intestine:
47.9
C7orf25
ENSSSCG00000016760
ENSG00000136197
Chromosome 7 open reading frame 25
Low tissue specificity
Detected in all
C7orf26
ENSSSCG00000036192
ENSG00000146576
Chromosome 7 open reading frame 26
Low tissue specificity
Detected in all
C7orf43
ENSSSCG00000007647
ENSG00000146826
Chromosome 7 open reading frame 43
Low tissue specificity
Detected in all
C7orf49
ENSSSCG00000016531
ENSG00000122783
Chromosome 7 open reading frame 49
Low tissue specificity
Detected in all
C7orf50
ENSSSCG00000038777
ENSG00000146540
Chromosome 7 open reading frame 50
Low tissue specificity
Detected in all
C7orf57
ENSSSCG00000033266
ENSG00000164746
Chromosome 7 open reading frame 57
Low tissue specificity
Detected in all
C8B
ENSSSCG00000003834
ENSG00000021852
Complement component C8 beta chain precursor
Tissue enriched
Detected in many
liver:
121.4
C8orf33
ENSSSCG00000005880
ENSG00000182307
Chromosome 8 open reading frame 33
Low tissue specificity
Detected in all
C8orf34
ENSSSCG00000035887
ENSG00000165084
Chromosome 8 open reading frame 34
Tissue enhanced
Detected in all
epididymis:
54.5
C8orf37
ENSSSCG00000034398
ENSG00000156172
Chromosome 8 open reading frame 37
Low tissue specificity
Detected in all
C8orf46
ENSSSCG00000023848
ENSG00000169085
Chromosome 8 open reading frame 46
Group enriched
Detected in some
brain:
59.3
lens:
47.6
C8orf48
ENSSSCG00000006972
ENSG00000164743
Chromosome 8 open reading frame 48
Low tissue specificity
Detected in all
C8orf82
ENSSSCG00000005895
ENSG00000213563
Chromosome 8 open reading frame 82
Tissue enhanced
Detected in all
testis:
65.2
C8orf88
ENSSSCG00000040562
ENSG00000253250
Chromosome 8 open reading frame 88
Tissue enhanced
Detected in all
lens:
83.5
C8orf89
ENSSSCG00000032228
ENSG00000274443
Chromosome 8 open reading frame 89
Tissue enhanced
Detected in many
brain:
25.8
testis:
28.1
C9orf116
ENSSSCG00000036914
ENSG00000160345
Chromosome 9 open reading frame 116
Tissue enhanced
Detected in all
fallopian tube:
30.6
upper respiratory system:
30.1
C9orf135
ENSSSCG00000035668
ENSG00000204711
Chromosome 9 open reading frame 135
Tissue enhanced
Detected in all
testis:
31.0
C9orf24
ENSSSCG00000010980
ENSG00000164972
Chromosome 9 open reading frame 24
Tissue enhanced
Detected in many
choroid plexus:
17.5
fallopian tube:
20.2
testis:
68.6
C9orf3
ENSSSCG00000010943
ENSG00000148120
Chromosome 9 open reading frame 3
Low tissue specificity
Detected in all
C9orf40
ENSSSCG00000031382
ENSG00000135045
Chromosome 9 open reading frame 40
Low tissue specificity
Detected in all
C9orf64
ENSSSCG00000034203
ENSG00000165118
Chromosome 9 open reading frame 64
Low tissue specificity
Detected in all
C9orf72
ENSSSCG00000011010
ENSG00000147894
Chromosome 9 open reading frame 72
Low tissue specificity
Detected in all
C9orf78
ENSSSCG00000030426
ENSG00000136819
Chromosome 9 open reading frame 78
Low tissue specificity
Detected in all
C9orf84
ENSSSCG00000005463
ENSG00000165181
Chromosome 9 open reading frame 84
Tissue enriched
Detected in some
testis:
15.0
C9orf85
ENSSSCG00000031105
ENSG00000155621
Chromosome 9 open reading frame 85
Low tissue specificity
Detected in all
CA10
ENSSSCG00000023169
ENSG00000154975
Carbonic anhydrase 10
Tissue enhanced
Detected in some
brain:
38.6
pineal gland:
34.4
retina:
18.7
CA11
ENSSSCG00000003147
ENSG00000063180
Carbonic anhydrase-related protein 11 precursor
Tissue enhanced
Detected in many
brain:
50.6
cartilage:
33.0
CA12
ENSSSCG00000004565
ENSG00000074410
Carbonic anhydrase 12
Tissue enhanced
Detected in many
kidney:
102.2
large intestine:
56.6
male glands:
36.5
CA13
ENSSSCG00000006143
ENSG00000185015
Carbonic anhydrase 13
Low tissue specificity
Detected in all
CA14
ENSSSCG00000027875
ENSG00000118298
Carbonic anhydrase 14
Tissue enhanced
Detected in all
brain:
35.7
skeletal muscle:
43.4
CA2
ENSSSCG00000006140
ENSG00000104267
Carbonic anhydrase 2
Tissue enhanced
Detected in many
choroid plexus:
70.9
stomach:
149.1
CA5B
ENSSSCG00000012141
ENSG00000169239
Carbonic anhydrase 5B
Tissue enhanced
Detected in all
adipose tissue:
42.3
CA7
ENSSSCG00000038785
ENSG00000168748
Carbonic anhydrase 7
Tissue enhanced
Detected in some
brain:
15.2
large intestine:
32.9
pineal gland:
8.1
salivary gland:
9.2
small intestine:
16.3
CA9
ENSSSCG00000005315
ENSG00000107159
Carbonic anhydrase 9
Tissue enhanced
Detected in many
small intestine:
28.4
stomach:
90.1
testis:
37.7
CAAP1
ENSSSCG00000005127
ENSG00000120159
Caspase activity and apoptosis inhibitor 1
Low tissue specificity
Detected in all
CAB39
ENSSSCG00000016266
ENSG00000135932
Calcium binding protein 39
Tissue enhanced
Detected in all
lens:
81.7
CAB39L
ENSSSCG00000009397
ENSG00000102547
Calcium binding protein 39 like
Tissue enriched
Detected in all
choroid plexus:
113.8
CABCOCO1
ENSSSCG00000033268
ENSG00000183346
Ciliary associated calcium binding coiled-coil 1
Tissue enhanced
Detected in many
choroid plexus:
14.7
fallopian tube:
11.8
CABIN1
ENSSSCG00000010062
ENSG00000099991
Calcineurin binding protein 1
Low tissue specificity
Detected in all
CABLES1
ENSSSCG00000003705
ENSG00000134508
Cdk5 and Abl enzyme substrate 1
Low tissue specificity
Detected in many
CABLES2
ENSSSCG00000007540
ENSG00000149679
Cdk5 and Abl enzyme substrate 2
Tissue enhanced
Detected in all
testis:
34.1
CABP1
ENSSSCG00000009913
ENSG00000157782
Calcium binding protein 1
Tissue enriched
Detected in some
brain:
58.6
CABP2
ENSSSCG00000020764
ENSG00000167791
Calcium binding protein 2
Group enriched
Detected in many
pineal gland:
14.4
retina:
26.1
CABP4
ENSSSCG00000012906
ENSG00000175544
Calcium binding protein 4
Group enriched
Detected in some
lymphoid tissue:
12.7
retina:
43.3
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