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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15648 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
OPA1
ENSSSCG00000011822
ENSG00000198836
OPA1, mitochondrial dynamin like GTPase
Low tissue specificity
Detected in all
OPA3
ENSSSCG00000037100
ENSG00000125741
OPA3, outer mitochondrial membrane lipid metabolism regulator
Low tissue specificity
Detected in all
OPCML
ENSSSCG00000037534
ENSG00000183715
Opioid binding protein/cell adhesion molecule like
Tissue enriched
Detected in some
brain:
42.1
OPHN1
ENSSSCG00000022676
ENSG00000079482
Oligophrenin 1
Low tissue specificity
Detected in all
OPLAH
ENSSSCG00000005911
ENSG00000178814
5-oxoprolinase, ATP-hydrolysing
Tissue enhanced
Detected in many
male glands:
45.1
salivary gland:
29.5
OPN1SW
ENSSSCG00000016580
ENSG00000128617
Short-wave-sensitive opsin 1
Tissue enriched
Detected in some
retina:
80.8
OPRD1
ENSSSCG00000027401
ENSG00000116329
Opioid receptor delta 1
Tissue enriched
Detected in some
thyroid gland:
34.7
OPRK1
ENSSSCG00000006264
ENSG00000082556
Opioid receptor kappa 1
Tissue enhanced
Detected in many
brain:
17.7
kidney:
16.8
pituitary gland:
15.5
OPRL1
ENSSSCG00000031228
ENSG00000125510
Nociceptin receptor
Tissue enhanced
Detected in many
adipose tissue:
20.5
aorta:
10.8
bone marrow:
10.0
brain:
15.0
OPTN
ENSSSCG00000023247
ENSG00000123240
Optineurin
Low tissue specificity
Detected in all
OR10V1
ENSSSCG00000013122
ENSG00000172289
Olfactory receptor family 10 subfamily V member 1
Tissue enhanced
Detected in some
fallopian tube:
4.3
pineal gland:
2.5
OR51L1
ENSSSCG00000014748
ENSG00000176798
Olfactory receptor family 51 subfamily L member 1
Tissue enhanced
Detected in some
brain:
2.2
testis:
2.1
thyroid gland:
3.8
OR6A2
ENSSSCG00000014617
ENSG00000184933
Olfactory receptor family 6 subfamily A member 2
Low tissue specificity
Detected in many
OR6C2
ENSSSCG00000035793
ENSG00000179695
Olfactory receptor family 6 subfamily C member 2
Tissue enhanced
Detected in some
cornea:
3.5
heart:
5.3
liver:
4.1
OR8D2
ENSSSCG00000038356
ENSG00000279116
Olfactory receptor family 8 subfamily D member 2 (gene/pseudogene)
Tissue enhanced
Detected in some
epididymis:
1.0
pineal gland:
1.5
testis:
5.0
ORAI1
ENSSSCG00000034510
ENSG00000276045
Calcium release-activated calcium channel protein 1
Low tissue specificity
Detected in all
ORAI2
ENSSSCG00000023912
ENSG00000160991
ORAI calcium release-activated calcium modulator 2
Low tissue specificity
Detected in all
ORAI3
ENSSSCG00000007770
ENSG00000175938
ORAI calcium release-activated calcium modulator 3
Low tissue specificity
Detected in all
ORAOV1
ENSSSCG00000012874
ENSG00000149716
Oral cancer overexpressed 1
Low tissue specificity
Detected in all
ORC1
ENSSSCG00000003861
ENSG00000085840
Origin recognition complex subunit 1
Tissue enhanced
Detected in many
lymphoid tissue:
18.0
testis:
41.2
ORC2
ENSSSCG00000016098
ENSG00000115942
Origin recognition complex subunit 2
Low tissue specificity
Detected in all
ORC3
ENSSSCG00000004306
ENSG00000135336
Origin recognition complex subunit 3
Low tissue specificity
Detected in all
ORC4
ENSSSCG00000015668
ENSG00000115947
Origin recognition complex subunit 4
Low tissue specificity
Detected in all
ORC5
ENSSSCG00000015427
ENSG00000164815
Origin recognition complex subunit 5
Low tissue specificity
Detected in all
ORC6
ENSSSCG00000024443
ENSG00000091651
Origin recognition complex subunit 6
Low tissue specificity
Detected in all
ORMDL3
ENSSSCG00000017492
ENSG00000172057
ORMDL sphingolipid biosynthesis regulator 3
Tissue enhanced
Detected in all
adipose tissue:
90.6
liver:
67.4
OS9
ENSSSCG00000035875
ENSG00000135506
OS9, endoplasmic reticulum lectin
Low tissue specificity
Detected in all
OSBP
ENSSSCG00000013125
ENSG00000110048
Oxysterol binding protein
Low tissue specificity
Detected in all
OSBP2
ENSSSCG00000010015
ENSG00000184792
Oxysterol binding protein 2
Group enriched
Detected in some
brain:
16.1
lens:
22.2
retina:
60.4
testis:
40.6
OSBPL10
ENSSSCG00000011230
ENSG00000144645
Oxysterol binding protein like 10
Tissue enhanced
Detected in all
testis:
40.0
OSBPL11
ENSSSCG00000026753
ENSG00000144909
Oxysterol binding protein like 11
Low tissue specificity
Detected in all
OSBPL1A
ENSSSCG00000003712
ENSG00000141447
Oxysterol binding protein like 1A
Tissue enhanced
Detected in all
brain:
50.2
lens:
90.9
OSBPL2
ENSSSCG00000036835
ENSG00000130703
Oxysterol binding protein like 2
Low tissue specificity
Detected in all
OSBPL3
ENSSSCG00000016715
ENSG00000070882
Oxysterol binding protein like 3
Low tissue specificity
Detected in many
OSBPL5
ENSSSCG00000012862
ENSG00000021762
Oxysterol binding protein like 5
Low tissue specificity
Detected in all
OSBPL6
ENSSSCG00000023133
ENSG00000079156
Oxysterol binding protein like 6
Low tissue specificity
Detected in all
OSBPL7
ENSSSCG00000017518
ENSG00000006025
Oxysterol binding protein like 7
Low tissue specificity
Detected in many
OSBPL8
ENSSSCG00000027503
ENSG00000091039
Oxysterol binding protein like 8
Low tissue specificity
Detected in all
OSBPL9
ENSSSCG00000021292
ENSG00000117859
Oxysterol binding protein like 9
Low tissue specificity
Detected in all
OSCAR
ENSSSCG00000003259
ENSG00000170909
Osteoclast associated, immunoglobulin-like receptor
Low tissue specificity
Detected in all
OSCP1
ENSSSCG00000036709
ENSG00000116885
Organic solute carrier partner 1
Tissue enhanced
Detected in many
choroid plexus:
26.6
OSER1
ENSSSCG00000022714
ENSG00000132823
Oxidative stress responsive serine rich 1
Low tissue specificity
Detected in all
OSGEP
ENSSSCG00000002138
ENSG00000092094
O-sialoglycoprotein endopeptidase
Low tissue specificity
Detected in all
OSGEPL1
ENSSSCG00000016043
ENSG00000128694
O-sialoglycoprotein endopeptidase like 1
Low tissue specificity
Detected in all
OSGIN2
ENSSSCG00000021184
ENSG00000164823
Oxidative stress induced growth inhibitor family member 2
Tissue enriched
Detected in all
lens:
91.5
OSMR
ENSSSCG00000016851
ENSG00000145623
Oncostatin M receptor
Low tissue specificity
Detected in all
OSR1
ENSSSCG00000008606
ENSG00000143867
Odd-skipped related transciption factor 1
Tissue enhanced
Detected in many
urinary bladder:
50.0
OSR2
ENSSSCG00000006073
ENSG00000164920
Odd-skipped related transciption factor 2
Tissue enhanced
Detected in many
cervix:
47.6
ductus deferens:
50.6
OSTC
ENSSSCG00000009145
ENSG00000198856
Oligosaccharyltransferase complex non-catalytic subunit
Tissue enhanced
Detected in all
male glands:
56.6
OSTF1
ENSSSCG00000005273
ENSG00000134996
Osteoclast-stimulating factor 1
Low tissue specificity
Detected in all
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