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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15648 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MYD88
ENSSSCG00000011251
ENSG00000172936
Myeloid differentiation primary response protein MyD88
Low tissue specificity
Detected in many
MYDGF
ENSSSCG00000034898
ENSG00000074842
Myeloid derived growth factor
Tissue enhanced
Detected in all
male glands:
46.8
MYEF2
ENSSSCG00000004661
ENSG00000104177
Myelin expression factor 2
Low tissue specificity
Detected in many
MYH14
ENSSSCG00000027407
ENSG00000105357
Myosin heavy chain 14
Tissue enhanced
Detected in many
cornea:
86.4
large intestine:
64.0
stomach:
61.9
MYH7B
ENSSSCG00000007288
ENSG00000078814
Myosin heavy chain 7B
Group enriched
Detected in many
heart:
57.1
lens:
20.8
skeletal muscle:
48.9
MYH9
ENSSSCG00000000145
ENSG00000100345
Myosin heavy chain 9
Low tissue specificity
Detected in all
MYL6
ENSSSCG00000039795
ENSG00000092841
Myosin light polypeptide 6
Tissue enhanced
Detected in all
smooth muscle:
405.0
MYL9
ENSSSCG00000036402
ENSG00000101335
Myosin regulatory light polypeptide 9
Tissue enhanced
Detected in many
smooth muscle:
241.8
urinary bladder:
100.0
MYLK
ENSSSCG00000011867
ENSG00000065534
Myosin light chain kinase
Tissue enhanced
Detected in many
ductus deferens:
164.5
endometrium:
133.8
smooth muscle:
313.8
MYLK3
ENSSSCG00000036874
ENSG00000140795
Myosin light chain kinase 3
Tissue enriched
Detected in some
heart:
59.0
MYLK4
ENSSSCG00000028777
ENSG00000145949
Myosin light chain kinase family member 4
Tissue enhanced
Detected in all
male glands:
34.9
skeletal muscle:
22.4
MYMK
ENSSSCG00000022891
ENSG00000187616
Myomaker, myoblast fusion factor
Tissue enhanced
Detected in many
heart:
28.3
liver:
14.1
MYNN
ENSSSCG00000026829
ENSG00000085274
Myoneurin
Low tissue specificity
Detected in all
MYO10
ENSSSCG00000016794
ENSG00000145555
Myosin X
Low tissue specificity
Detected in all
MYO16
ENSSSCG00000009543
ENSG00000041515
Myosin XVI
Tissue enhanced
Detected in some
brain:
36.7
lens:
16.1
liver:
11.6
pineal gland:
12.5
retina:
11.4
MYO19
ENSSSCG00000017682
ENSG00000278259
Myosin XIX
Tissue enhanced
Detected in many
salivary gland:
23.0
MYO1B
ENSSSCG00000016061
ENSG00000128641
Myosin IB
Tissue enhanced
Detected in all
lens:
79.8
male glands:
71.5
MYO1C
ENSSSCG00000021821
ENSG00000197879
Myosin IC
Low tissue specificity
Detected in many
MYO1E
ENSSSCG00000004587
ENSG00000157483
Myosin IE
Low tissue specificity
Detected in all
MYO1F
ENSSSCG00000013604
ENSG00000142347
Myosin IF
Low tissue specificity
Detected in all
MYO5A
ENSSSCG00000004620
ENSG00000197535
CAMP-regulated phosphoprotein 19
Tissue enhanced
Detected in all
brain:
69.8
MYO5B
ENSSSCG00000004511
ENSG00000167306
Myosin VB
Tissue enhanced
Detected in many
lens:
59.4
MYO6
ENSSSCG00000004478
ENSG00000196586
Unconventional myosin-VI
Low tissue specificity
Detected in all
MYO7A
ENSSSCG00000014876
ENSG00000137474
Unconventional myosin-VIIa
Tissue enhanced
Detected in many
adrenal gland:
29.3
kidney:
37.4
MYO9A
ENSSSCG00000004979
ENSG00000066933
Myosin IXA
Low tissue specificity
Detected in all
MYO9B
ENSSSCG00000013876
ENSG00000099331
Myosin IXB
Low tissue specificity
Detected in all
MYOC
ENSSSCG00000035066
ENSG00000034971
Myocilin precursor
Tissue enhanced
Detected in many
adipose tissue:
25.0
aorta:
25.1
cartilage:
31.5
penis:
25.0
MYOF
ENSSSCG00000010476
ENSG00000138119
Myoferlin
Low tissue specificity
Detected in all
MYOG
ENSSSCG00000034654
ENSG00000122180
Myogenin
Tissue enhanced
Detected in many
skeletal muscle:
27.7
MYORG
ENSSSCG00000033196
ENSG00000164976
Myogenesis regulating glycosidase (putative)
Tissue enhanced
Detected in all
heart:
42.5
skeletal muscle:
45.8
MYOZ1
ENSSSCG00000010304
ENSG00000177791
Myozenin-1
Tissue enriched
Detected in many
skeletal muscle:
328.6
MYPOP
ENSSSCG00000038739
ENSG00000176182
Myb related transcription factor, partner of profilin
Low tissue specificity
Detected in all
MYRFL
ENSSSCG00000023936
ENSG00000166268
Myelin regulatory factor-like
Tissue enhanced
Detected in all
small intestine:
29.4
MYRIP
ENSSSCG00000011269
ENSG00000170011
Rab effector MyRIP
Tissue enhanced
Detected in many
male glands:
35.2
MYSM1
ENSSSCG00000003830
ENSG00000162601
Myb like, SWIRM and MPN domains 1
Low tissue specificity
Detected in all
MYT1
ENSSSCG00000039212
ENSG00000196132
Myelin transcription factor 1
Tissue enhanced
Detected in some
brain:
27.3
pituitary gland:
8.0
retina:
15.7
MYT1L
ENSSSCG00000029334
ENSG00000186487
Myelin transcription factor 1 like
Group enriched
Detected in some
brain:
17.3
retina:
4.5
MZF1
ENSSSCG00000031562
ENSG00000099326
Myeloid zinc finger 1
Low tissue specificity
Detected in all
MZT1
ENSSSCG00000040073
ENSG00000204899
Mitotic spindle organizing protein 1
Low tissue specificity
Detected in all
N4BP1
ENSSSCG00000002841
ENSG00000102921
NEDD4 binding protein 1
Low tissue specificity
Detected in all
N4BP2
ENSSSCG00000008792
ENSG00000078177
NEDD4 binding protein 2
Low tissue specificity
Detected in all
N4BP2L2
ENSSSCG00000009341
ENSG00000244754
NEDD4 binding protein 2 like 2
Low tissue specificity
Detected in all
N4BP3
ENSSSCG00000014034
ENSG00000145911
NEDD4 binding protein 3
Low tissue specificity
Detected in many
na
ENSSSCG00000000021
ENSG00000241484,ENSG00000248405
Rho GTPase-activating protein 8
Tissue enhanced
Detected in many
male glands:
34.8
salivary gland:
31.3
na
ENSSSCG00000000071
Tissue enhanced
Detected in all
lens:
135.9
na
ENSSSCG00000000081
ENSG00000176177
Tissue enhanced
Detected in all
testis:
32.3
na
ENSSSCG00000000089
Low tissue specificity
Detected in all
na
ENSSSCG00000000097
ENSG00000100216
Low tissue specificity
Detected in all
na
ENSSSCG00000000107
ENSG00000213923,ENSG00000283900
Low tissue specificity
Detected in all
na
ENSSSCG00000000144
Thioredoxin, mitochondrial
Low tissue specificity
Detected in all
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