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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15066 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000022258
Tissue enhanced
Detected in all
large intestine:
69.0
na
ENSSSCG00000022295
Tissue enhanced
Detected in all
brain:
80.1
lens:
99.7
na
ENSSSCG00000022345
ENSG00000128656
Tissue enhanced
Detected in many
brain:
141.2
pineal gland:
37.6
na
ENSSSCG00000022358
ENSG00000157869
Ras-related protein Rab-28
Low tissue specificity
Detected in all
na
ENSSSCG00000022361
ENSG00000153064
Tissue enhanced
Detected in many
lymphoid tissue:
47.9
na
ENSSSCG00000022423
Low tissue specificity
Detected in all
na
ENSSSCG00000022449
ENSG00000139675
Low tissue specificity
Detected in all
na
ENSSSCG00000022466
ENSG00000196678
Tissue enhanced
Detected in all
testis:
24.5
na
ENSSSCG00000022506
ENSG00000142156
Tissue enhanced
Detected in many
cartilage:
196.4
synovial tissue:
157.5
na
ENSSSCG00000022567
Tissue enriched
Detected in some
heart:
20.8
na
ENSSSCG00000022634
Low tissue specificity
Detected in all
na
ENSSSCG00000022640
Low tissue specificity
Detected in all
na
ENSSSCG00000022659
Clathrin heavy chain 1
Low tissue specificity
Detected in all
na
ENSSSCG00000022760
Heterogeneous nuclear ribonucleoprotein K
Low tissue specificity
Detected in all
na
ENSSSCG00000022773
Caspase-15
Low tissue specificity
Detected in all
na
ENSSSCG00000022839
ENSG00000169991
Group enriched
Detected in many
mouth:
19.9
skin:
68.8
na
ENSSSCG00000022864
ENSG00000242372
Eukaryotic translation initiation factor 6
Low tissue specificity
Detected in all
na
ENSSSCG00000022876
Tissue enhanced
Detected in many
fallopian tube:
13.9
heart:
8.2
lung:
13.6
upper respiratory system:
7.0
na
ENSSSCG00000022906
ENSG00000142512,ENSG00000161640
Low tissue specificity
Detected in all
na
ENSSSCG00000022912
ENSG00000122643
Low tissue specificity
Detected in all
na
ENSSSCG00000022925
ENSG00000059804,ENSG00000173262
Low tissue specificity
Detected in all
na
ENSSSCG00000022963
ENSG00000059145
Low tissue specificity
Detected in all
na
ENSSSCG00000023012
Tissue enhanced
Detected in many
male glands:
13.1
mesothelial tissue:
14.6
na
ENSSSCG00000023014
ENSG00000161649
Tissue enhanced
Detected in all
adipose tissue:
64.5
na
ENSSSCG00000023091
Low tissue specificity
Detected in all
na
ENSSSCG00000023126
Low tissue specificity
Detected in all
na
ENSSSCG00000023127
ENSG00000168925,ENSG00000168928
Low tissue specificity
Detected in many
na
ENSSSCG00000023139
ENSG00000181038
Tissue enhanced
Detected in all
lens:
36.1
na
ENSSSCG00000023155
ENSG00000182372
Protein CLN8
Tissue enhanced
Detected in all
brain:
50.1
na
ENSSSCG00000023160
Uncharacterized protein LOC100156657
Low tissue specificity
Detected in all
na
ENSSSCG00000023172
ENSG00000130021
Low tissue specificity
Detected in all
na
ENSSSCG00000023187
Tissue enhanced
Detected in many
kidney:
31.8
mouth:
41.8
na
ENSSSCG00000023195
ENSG00000180479
Low tissue specificity
Detected in all
na
ENSSSCG00000023200
Low tissue specificity
Detected in all
na
ENSSSCG00000023219
Low tissue specificity
Detected in all
na
ENSSSCG00000023263
ENSG00000278845
Tissue enriched
Detected in all
lens:
89.4
na
ENSSSCG00000023264
ENSG00000138413
Tissue enhanced
Detected in all
large intestine:
54.1
na
ENSSSCG00000023277
ENSG00000125356
Tissue enhanced
Detected in all
pineal gland:
87.3
na
ENSSSCG00000023294
ENSG00000172086
Lysine-rich coiled-coil protein 1
Low tissue specificity
Detected in all
na
ENSSSCG00000023322
ENSG00000049089
Tissue enriched
Detected in many
cartilage:
148.3
na
ENSSSCG00000023323
ENSG00000255432,ENSG00000278615
Low tissue specificity
Detected in all
na
ENSSSCG00000023325
ENSG00000114786,ENSG00000243989
Aminoacylase-1
Group enriched
Detected in all
kidney:
111.2
liver:
34.7
na
ENSSSCG00000023331
ENSG00000198258
Ubiquitin-like protein 5
Low tissue specificity
Detected in all
na
ENSSSCG00000023403
Tissue enhanced
Detected in many
breast:
14.5
cartilage:
41.8
testis:
16.2
na
ENSSSCG00000023426
Tissue enriched
Detected in many
liver:
89.5
na
ENSSSCG00000023436
ENSG00000151364
Tissue enhanced
Detected in many
male glands:
21.3
stomach:
21.7
na
ENSSSCG00000023467
Tissue enhanced
Detected in all
mouth:
95.4
na
ENSSSCG00000023479
Tissue enhanced
Detected in many
cornea:
37.9
na
ENSSSCG00000023540
ENSG00000272899
Tissue enhanced
Detected in all
testis:
31.8
na
ENSSSCG00000023560
Low tissue specificity
Detected in all
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