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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15066 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000000694
Glyceraldehyde-3-phosphate dehydrogenase
Group enriched
Detected in all
heart:
275.0
lens:
794.8
skeletal muscle:
1003.0
na
ENSSSCG00000000719
ENSG00000139180
Tissue enhanced
Detected in all
skeletal muscle:
62.7
na
ENSSSCG00000000734
ENSG00000110900
Low tissue specificity
Detected in all
na
ENSSSCG00000000753
Low tissue specificity
Detected in all
na
ENSSSCG00000000812
Tissue enhanced
Detected in many
endometrium:
23.0
fallopian tube:
18.4
na
ENSSSCG00000000849
Endoplasmin precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000000882
ENSG00000185046
Tissue enriched
Detected in many
brain:
64.8
na
ENSSSCG00000000887
Low tissue specificity
Detected in all
na
ENSSSCG00000000905
ENSG00000184752
Tissue enhanced
Detected in all
lens:
108.2
na
ENSSSCG00000000908
Tissue enhanced
Detected in all
testis:
130.4
na
ENSSSCG00000000952
ENSG00000186908
Low tissue specificity
Detected in all
na
ENSSSCG00000000959
ENSG00000133424
Low tissue specificity
Detected in all
na
ENSSSCG00000001010
ENSG00000124535
Low tissue specificity
Detected in all
na
ENSSSCG00000001038
Low tissue specificity
Detected in all
na
ENSSSCG00000001063
ENSG00000007944
Low tissue specificity
Detected in all
na
ENSSSCG00000001075
ENSG00000124795
Low tissue specificity
Detected in all
na
ENSSSCG00000001083
ENSG00000112273
Tissue enriched
Detected in many
testis:
67.0
na
ENSSSCG00000001088
Low tissue specificity
Detected in all
na
ENSSSCG00000001131
ENSG00000112763,ENSG00000124508
Tissue enhanced
Detected in many
lymphoid tissue:
35.9
male glands:
22.6
stomach:
18.4
na
ENSSSCG00000001202
ENSG00000186020
Low tissue specificity
Detected in all
na
ENSSSCG00000001204
ENSG00000187626,ENSG00000189298
Low tissue specificity
Detected in all
na
ENSSSCG00000001216
Low tissue specificity
Detected in many
na
ENSSSCG00000001229
MHC class I antigen 2 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000001231
Low tissue specificity
Detected in many
na
ENSSSCG00000001341
Low tissue specificity
Detected in all
na
ENSSSCG00000001342
ENSG00000204599,ENSG00000248167
Tripartite motif-containing protein 39
Low tissue specificity
Detected in all
na
ENSSSCG00000001394
Low tissue specificity
Detected in many
na
ENSSSCG00000001395
Low tissue specificity
Detected in all
na
ENSSSCG00000001396
MHC class I antigen 8 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000001398
MHC class I antigen 7 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000001414
ENSG00000263020
Casein kinase II subunit beta
Low tissue specificity
Detected in all
na
ENSSSCG00000001424
Helicase SKI2W
Low tissue specificity
Detected in all
na
ENSSSCG00000001431
ENSG00000204315
FK506-binding protein-like
Tissue enriched
Detected in many
testis:
43.3
na
ENSSSCG00000001433
ENSG00000221988
Lysosomal thioesterase PPT2 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000001447
Butyrophilin, subfamily 1, member precursor
Tissue enriched
Detected in many
small intestine:
40.3
na
ENSSSCG00000001455
MHC class II histocompatibility antigen SLA-DRB1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
150.5
na
ENSSSCG00000001456
ENSG00000196735
SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
163.6
na
ENSSSCG00000001458
Tissue enhanced
Detected in many
lymphoid tissue:
34.5
na
ENSSSCG00000001500
ENSG00000124749
Tissue enhanced
Detected in many
ductus deferens:
35.8
penis:
26.8
na
ENSSSCG00000001505
ENSG00000204220
Prefoldin subunit 6
Low tissue specificity
Detected in all
na
ENSSSCG00000001517
Tissue enhanced
Detected in many
testis:
39.4
na
ENSSSCG00000001528
Ribosomal protein S10
Tissue enhanced
Detected in all
lens:
165.6
male glands:
204.2
na
ENSSSCG00000001546
ENSG00000112039
Low tissue specificity
Detected in all
na
ENSSSCG00000001594
Tissue enhanced
Detected in many
fallopian tube:
23.8
testis:
16.1
na
ENSSSCG00000001596
ENSG00000124615
Tissue enhanced
Detected in all
kidney:
48.2
liver:
53.3
mouth:
50.4
na
ENSSSCG00000001612
Tissue enhanced
Detected in all
testis:
39.2
na
ENSSSCG00000001655
ENSG00000124733
Male-enhanced antigen 1
Tissue enriched
Detected in all
testis:
230.8
na
ENSSSCG00000001696
ENSG00000180992
Low tissue specificity
Detected in all
na
ENSSSCG00000001725
ENSG00000069122
Tissue enhanced
Detected in many
adipose tissue:
60.7
na
ENSSSCG00000001762
ENSG00000136425
Tissue enhanced
Detected in many
brain:
56.5
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