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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14772 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C18orf25
ENSSSCG00000004500
ENSG00000152242
Chromosome 18 open reading frame 25
Low tissue specificity
Detected in all
C18orf32
ENSSSCG00000034415
ENSG00000177576
Chromosome 18 open reading frame 32
Tissue enhanced
Detected in all
male glands:
53.3
C18orf54
ENSSSCG00000004531
ENSG00000166845
Chromosome 18 open reading frame 54
Low tissue specificity
Detected in all
C18orf63
ENSSSCG00000004874
ENSG00000206043
Chromosome 18 open reading frame 63
Group enriched
Detected in some
ovary:
16.9
testis:
22.4
C19orf12
ENSSSCG00000032153
ENSG00000131943
Chromosome 19 open reading frame 12
Low tissue specificity
Detected in all
C19orf24
ENSSSCG00000028040
ENSG00000228300
Chromosome 19 open reading frame 24
Group enriched
Detected in many
cartilage:
9.1
male glands:
34.2
ovary:
8.7
C19orf25
ENSSSCG00000022265
ENSG00000119559
Chromosome 19 open reading frame 25
Low tissue specificity
Detected in all
C19orf38
ENSSSCG00000013632
ENSG00000214212
Chromosome 19 open reading frame 38
Tissue enhanced
Detected in many
male glands:
32.4
C19orf44
ENSSSCG00000013859
ENSG00000105072
Chromosome 19 open reading frame 44
Low tissue specificity
Detected in all
C19orf47
ENSSSCG00000027016
ENSG00000160392
Chromosome 19 open reading frame 47
Tissue enhanced
Detected in all
heart:
38.4
skeletal muscle:
62.6
C19orf53
ENSSSCG00000013757
ENSG00000104979
Chromosome 19 open reading frame 53
Low tissue specificity
Detected in all
C19orf54
ENSSSCG00000040533
ENSG00000188493
Chromosome 19 open reading frame 54
Low tissue specificity
Detected in all
C19orf66
ENSSSCG00000013664
ENSG00000130813
Repressor of yield of DENV protein
Low tissue specificity
Detected in many
C19orf70
ENSSSCG00000013524
ENSG00000174917
MICOS complex subunit MIC13 precursor
Low tissue specificity
Detected in all
C19orf81
ENSSSCG00000037098
ENSG00000235034
Chromosome 19 open reading frame 81
Low tissue specificity
Detected in all
C1GALT1C1L
ENSSSCG00000032888
ENSG00000223658
C1GALT1-specific chaperone 1 like
Low tissue specificity
Detected in many
C1orf109
ENSSSCG00000039905
ENSG00000116922
Chromosome 1 open reading frame 109
Low tissue specificity
Detected in all
C1orf112
ENSSSCG00000006284
ENSG00000000460
Chromosome 1 open reading frame 112
Low tissue specificity
Detected in all
C1orf115
ENSSSCG00000027882
ENSG00000162817
Chromosome 1 open reading frame 115
Tissue enhanced
Detected in many
small intestine:
52.4
C1orf116
ENSSSCG00000032446
ENSG00000182795
Chromosome 1 open reading frame 116
Tissue enhanced
Detected in many
kidney:
35.4
mouth:
34.5
C1orf122
ENSSSCG00000038888
ENSG00000197982
Chromosome 1 open reading frame 122
Tissue enhanced
Detected in all
lens:
64.4
C1orf123
ENSSSCG00000003850
ENSG00000162384
Chromosome 1 open reading frame 123
Low tissue specificity
Detected in all
C1orf131
ENSSSCG00000010176
ENSG00000143633
Chromosome 1 open reading frame 131
Low tissue specificity
Detected in all
C1orf141
ENSSSCG00000003803
ENSG00000203963
Chromosome 1 open reading frame 141
Tissue enriched
Detected in all
testis:
40.3
C1orf174
ENSSSCG00000031102
ENSG00000198912
UPF0688 protein C1orf174 homolog
Tissue enhanced
Detected in all
testis:
29.5
C1orf194
ENSSSCG00000033292
ENSG00000179902
Chromosome 1 open reading frame 194
Low tissue specificity
Detected in all
C1orf198
ENSSSCG00000010181
ENSG00000119280
Chromosome 1 open reading frame 198
Tissue enhanced
Detected in all
brain:
51.1
C1orf21
ENSSSCG00000015565
ENSG00000116667
Chromosome 1 open reading frame 21
Tissue enhanced
Detected in all
skeletal muscle:
122.4
C1orf35
ENSSSCG00000013991
ENSG00000143793
Multiple myeloma tumor-associated protein 2
Low tissue specificity
Detected in all
C1orf43
ENSSSCG00000006554
ENSG00000143612
Uncharacterized protein C1orf43 homolog
Low tissue specificity
Detected in all
C1orf53
ENSSSCG00000032380
ENSG00000203724
Chromosome 1 open reading frame 53
Low tissue specificity
Detected in all
C1orf74
ENSSSCG00000015613
ENSG00000162757
Chromosome 1 open reading frame 74
Low tissue specificity
Detected in all
C1QA
ENSSSCG00000003524
ENSG00000173372
Complement C1q subcomponent subunit A precursor
Tissue enhanced
Detected in all
lymphoid tissue:
142.8
synovial tissue:
77.9
C1QB
ENSSSCG00000033512
ENSG00000173369
Complement C1q subcomponent subunit B precursor
Tissue enhanced
Detected in many
lymphoid tissue:
125.8
synovial tissue:
91.1
C1QC
ENSSSCG00000038706
ENSG00000159189
Complement C1q subcomponent subunit C precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
synovial tissue:
86.3
C1QL3
ENSSSCG00000011043
ENSG00000165985
Complement C1q like 3
Tissue enriched
Detected in many
brain:
39.1
C1QTNF1
ENSSSCG00000035511
ENSG00000173918
C1q and TNF related 1
Low tissue specificity
Detected in many
C1QTNF12
ENSSSCG00000003333
ENSG00000184163
C1q and TNF related 12
Tissue enhanced
Detected in many
skin:
22.9
C1QTNF2
ENSSSCG00000035993
ENSG00000145861
Complement C1q tumor necrosis factor-related protein 2 precursor
Low tissue specificity
Detected in all
C1QTNF6
ENSSSCG00000030325
ENSG00000133466
Complement C1q tumor necrosis factor-related protein 6 precursor
Tissue enhanced
Detected in all
dura mater:
39.8
lens:
77.4
C1QTNF7
ENSSSCG00000008737
ENSG00000163145
Complement C1q tumor necrosis factor-related protein 7 precursor
Tissue enhanced
Detected in many
cornea:
30.9
C1R
ENSSSCG00000000675
ENSG00000159403
Complement C1r
Tissue enhanced
Detected in many
liver:
178.7
C1RL
ENSSSCG00000033913
ENSG00000139178
Complement C1r subcomponent like
Tissue enhanced
Detected in all
liver:
36.8
C1S
ENSSSCG00000039847
ENSG00000182326
Complement C1s subcomponent precursor
Tissue enhanced
Detected in all
liver:
141.3
C2
ENSSSCG00000001422
ENSG00000166278
Complement C2 precursor
Tissue enhanced
Detected in many
liver:
61.2
pineal gland:
31.1
synovial tissue:
38.1
C20orf194
ENSSSCG00000007155
ENSG00000088854
Chromosome 20 open reading frame 194
Low tissue specificity
Detected in all
C20orf196
ENSSSCG00000039269
ENSG00000171984
Chromosome 20 open reading frame 196
Low tissue specificity
Detected in all
C21orf91
ENSSSCG00000033025
ENSG00000154642
Chromosome 21 open reading frame 91
Tissue enhanced
Detected in all
brain:
38.0
retina:
44.2
C22orf23
ENSSSCG00000000117
ENSG00000128346
Chromosome 22 open reading frame 23
Tissue enhanced
Detected in many
testis:
33.3
C22orf39
ENSSSCG00000040740
ENSG00000242259
Chromosome 22 open reading frame 39
Low tissue specificity
Detected in all
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