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UMAP gene cluster
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Keyword
Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14772 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ANXA9
ENSSSCG00000006643
ENSG00000143412
Annexin A9
Low tissue specificity
Detected in all
AOX1
ENSSSCG00000029606
ENSG00000138356
Aldehyde oxidase
Tissue enriched
Detected in many
liver:
125.2
AP1B1
ENSSSCG00000009978
ENSG00000100280
Adaptor related protein complex 1 beta 1 subunit
Low tissue specificity
Detected in all
AP1G1
ENSSSCG00000002740
ENSG00000166747
Adaptor related protein complex 1 gamma 1 subunit
Low tissue specificity
Detected in all
AP1G2
ENSSSCG00000002015
ENSG00000213983
Adaptor related protein complex 1 gamma 2 subunit
Low tissue specificity
Detected in all
AP1M1
ENSSSCG00000013856
ENSG00000072958
AP-1 complex subunit mu-1
Tissue enhanced
Detected in all
testis:
85.0
AP1S1
ENSSSCG00000021145
ENSG00000106367
Adaptor related protein complex 1 sigma 1 subunit
Tissue enhanced
Detected in all
brain:
56.0
AP1S2
ENSSSCG00000036074
ENSG00000182287
Adaptor related protein complex 1 sigma 2 subunit
Low tissue specificity
Detected in all
AP1S3
ENSSSCG00000040847
ENSG00000152056
Adaptor related protein complex 1 sigma 3 subunit
Tissue enhanced
Detected in many
male glands:
31.5
AP2A1
ENSSSCG00000003199
ENSG00000196961
Adaptor related protein complex 2 alpha 1 subunit
Low tissue specificity
Detected in all
AP2A2
ENSSSCG00000012836
ENSG00000183020
Adaptor related protein complex 2 alpha 2 subunit
Low tissue specificity
Detected in all
AP2B1
ENSSSCG00000017712
ENSG00000006125
AP-2 complex subunit beta
Tissue enhanced
Detected in all
testis:
64.4
AP2M1
ENSSSCG00000024437
ENSG00000161203
AP-2 complex subunit mu
Low tissue specificity
Detected in all
AP2S1
ENSSSCG00000003106
ENSG00000042753
AP-2 complex subunit sigma isoform 2
Low tissue specificity
Detected in all
AP3B1
ENSSSCG00000014101
ENSG00000132842
AP-3 complex subunit beta-1
Low tissue specificity
Detected in all
AP3B2
ENSSSCG00000001807
ENSG00000103723
Adaptor related protein complex 3 beta 2 subunit
Tissue enhanced
Detected in many
brain:
22.5
pineal gland:
16.2
retina:
13.5
AP3M1
ENSSSCG00000010314
ENSG00000185009
AP-3 complex subunit mu-1
Low tissue specificity
Detected in all
AP3M2
ENSSSCG00000007033
ENSG00000070718
Adaptor related protein complex 3 mu 2 subunit
Tissue enhanced
Detected in all
brain:
20.1
pineal gland:
17.5
AP3S1
ENSSSCG00000037595
ENSG00000177879
Adaptor related protein complex 3 sigma 1 subunit
Low tissue specificity
Detected in all
AP3S2
ENSSSCG00000030174
ENSG00000157823
AP-3 complex subunit sigma-2
Tissue enhanced
Detected in all
lens:
67.4
AP4B1
ENSSSCG00000006762
ENSG00000134262
Adaptor related protein complex 4 beta 1 subunit
Low tissue specificity
Detected in all
AP4E1
ENSSSCG00000004634
ENSG00000081014
Adaptor related protein complex 4 epsilon 1 subunit
Low tissue specificity
Detected in all
AP4M1
ENSSSCG00000034288
ENSG00000221838
Adaptor related protein complex 4 mu 1 subunit
Low tissue specificity
Detected in all
AP4S1
ENSSSCG00000001972
ENSG00000100478
AP-4 complex subunit sigma-1
Low tissue specificity
Detected in all
AP5B1
ENSSSCG00000012978
ENSG00000254470
Adaptor related protein complex 5 beta 1 subunit
Low tissue specificity
Detected in all
AP5M1
ENSSSCG00000005065
ENSG00000053770
Adaptor related protein complex 5 mu 1 subunit
Low tissue specificity
Detected in all
AP5S1
ENSSSCG00000033297
ENSG00000125843
Adaptor related protein complex 5 sigma 1 subunit
Low tissue specificity
Detected in all
AP5Z1
ENSSSCG00000007577
ENSG00000242802
AP-5 complex subunit zeta-1
Low tissue specificity
Detected in all
APAF1
ENSSSCG00000000884
ENSG00000120868
Apoptotic peptidase activating factor 1
Low tissue specificity
Detected in all
APBA3
ENSSSCG00000013492
ENSG00000011132
Amyloid beta precursor protein binding family A member 3
Tissue enriched
Detected in all
lens:
86.9
APBB1
ENSSSCG00000014628
ENSG00000166313
Amyloid beta precursor protein binding family B member 1
Tissue enhanced
Detected in many
brain:
43.3
lens:
26.2
APBB1IP
ENSSSCG00000030156
ENSG00000077420
Amyloid beta precursor protein binding family B member 1 interacting protein
Tissue enriched
Detected in many
lymphoid tissue:
75.5
APBB2
ENSSSCG00000022168
ENSG00000163697
Amyloid beta precursor protein binding family B member 2
Tissue enhanced
Detected in all
kidney:
79.7
APBB3
ENSSSCG00000014366
ENSG00000113108
Amyloid beta precursor protein binding family B member 3
Low tissue specificity
Detected in all
APC
ENSSSCG00000014207
ENSG00000134982
Adenomatous polyposis coli protein
Tissue enhanced
Detected in all
brain:
50.8
APCDD1
ENSSSCG00000039797
ENSG00000154856
APC down-regulated 1
Tissue enhanced
Detected in all
epididymis:
55.5
APEH
ENSSSCG00000011385
ENSG00000164062
Acylamino-acid-releasing enzyme
Tissue enhanced
Detected in all
epididymis:
63.2
APELA
ENSSSCG00000031750
ENSG00000248329
Apelin receptor early endogenous ligand
Tissue enhanced
Detected in many
brain:
45.9
kidney:
46.6
APH1A
ENSSSCG00000028297
ENSG00000117362
Gamma-secretase subunit APH-1A
Low tissue specificity
Detected in all
API5
ENSSSCG00000013285
ENSG00000166181
Apoptosis inhibitor 5
Low tissue specificity
Detected in all
APIP
ENSSSCG00000013299
ENSG00000149089
APAF1 interacting protein
Tissue enhanced
Detected in all
male glands:
73.4
APLF
ENSSSCG00000008346
ENSG00000169621
Aprataxin and PNKP like factor
Low tissue specificity
Detected in all
APLN
ENSSSCG00000030843
ENSG00000171388
Apelin
Tissue enhanced
Detected in many
bone marrow:
26.1
brain:
80.8
APLNR
ENSSSCG00000038869
ENSG00000134817
Apelin receptor
Tissue enhanced
Detected in many
brain:
56.9
APLP2
ENSSSCG00000015244
ENSG00000084234
Amyloid beta precursor like protein 2
Low tissue specificity
Detected in all
APMAP
ENSSSCG00000036286
ENSG00000101474
Adipocyte plasma membrane associated protein
Low tissue specificity
Detected in all
APOA1
ENSSSCG00000030921
ENSG00000118137
Apolipoprotein A-I preproprotein
Group enriched
Detected in many
liver:
330.7
vagus nerve:
134.4
APOA4
ENSSSCG00000040689
ENSG00000110244
Apolipoprotein A-IV precursor
Group enriched
Detected in all
liver:
51.3
small intestine:
35.0
APOBEC2
ENSSSCG00000036018
ENSG00000124701
Apolipoprotein B mRNA editing enzyme catalytic subunit 2
Tissue enhanced
Detected in all
heart:
33.8
skeletal muscle:
76.2
APOBEC3B
ENSSSCG00000000091
ENSG00000100298
DNA dC->dU-editing enzyme APOBEC-3B
Tissue enhanced
Detected in all
lymphoid tissue:
44.2
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