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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14772 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KMT2E
ENSSSCG00000029082
ENSG00000005483
Lysine methyltransferase 2E
Low tissue specificity
Detected in all
KMT5A
ENSSSCG00000009777
ENSG00000183955
Lysine methyltransferase 5A
Low tissue specificity
Detected in all
KMT5B
ENSSSCG00000031459
ENSG00000110066
Lysine methyltransferase 5B
Low tissue specificity
Detected in all
KMT5C
ENSSSCG00000035829
ENSG00000133247
Lysine methyltransferase 5C
Low tissue specificity
Detected in all
KNCN
ENSSSCG00000034300
ENSG00000162456
Kinocilin
Tissue enhanced
Detected in many
choroid plexus:
9.4
epididymis:
6.6
KNSTRN
ENSSSCG00000004775
ENSG00000128944
Kinetochore localized astrin/SPAG5 binding protein
Tissue enhanced
Detected in all
testis:
48.9
KNTC1
ENSSSCG00000039546
ENSG00000184445
Kinetochore associated 1
Low tissue specificity
Detected in all
KPNA1
ENSSSCG00000028475
ENSG00000114030
Importin subunit alpha-5
Tissue enhanced
Detected in all
lens:
81.4
KPNA2
ENSSSCG00000029005
ENSG00000182481
Importin subunit alpha-1
Tissue enriched
Detected in many
testis:
108.3
KPNA3
ENSSSCG00000024125
ENSG00000102753
Importin subunit alpha-4
Tissue enhanced
Detected in all
lens:
95.6
KPNA4
ENSSSCG00000031077
ENSG00000186432
Karyopherin subunit alpha 4
Tissue enhanced
Detected in all
lens:
105.1
KPNA5
ENSSSCG00000004262
ENSG00000196911
Karyopherin subunit alpha 5
Low tissue specificity
Detected in all
KPNA6
ENSSSCG00000034017
ENSG00000025800
Karyopherin subunit alpha 6
Tissue enhanced
Detected in all
cornea:
64.4
KPNA7
ENSSSCG00000007607
ENSG00000185467
Importin subunit alpha-8
Tissue enhanced
Detected in some
epididymis:
8.6
KPNB1
ENSSSCG00000017514
ENSG00000108424
Karyopherin subunit beta 1
Tissue enhanced
Detected in all
lens:
100.8
KPTN
ENSSSCG00000003121
ENSG00000118162
Kaptin, actin binding protein
Low tissue specificity
Detected in all
KRAS
ENSSSCG00000026969
ENSG00000133703
KRAS proto-oncogene, GTPase
Low tissue specificity
Detected in all
KRBA1
ENSSSCG00000034873
ENSG00000133619
KRAB-A domain containing 1
Tissue enhanced
Detected in many
male glands:
16.4
KREMEN1
ENSSSCG00000009972
ENSG00000183762
Kringle containing transmembrane protein 1
Low tissue specificity
Detected in all
KRI1
ENSSSCG00000013644
ENSG00000129347
KRI1 homolog
Low tissue specificity
Detected in all
KRIT1
ENSSSCG00000015313
ENSG00000001631
KRIT1, ankyrin repeat containing
Low tissue specificity
Detected in all
KRR1
ENSSSCG00000033524
ENSG00000111615
KRR1, small subunit processome component homolog
Low tissue specificity
Detected in all
KRT27
ENSSSCG00000017462
ENSG00000171446
Keratin, type I cytoskeletal 27
Group enriched
Detected in many
brain:
37.1
skin:
80.0
KRT7
ENSSSCG00000038966
ENSG00000135480
Keratin 7
Tissue enhanced
Detected in many
breast:
50.7
gallbladder:
38.2
salivary gland:
40.2
KRT80
ENSSSCG00000040636
ENSG00000167767
Keratin 80
Tissue enhanced
Detected in all
salivary gland:
44.8
KRTCAP2
ENSSSCG00000006527
ENSG00000163463
Keratinocyte-associated protein 2
Low tissue specificity
Detected in all
KRTCAP3
ENSSSCG00000040062
ENSG00000157992
Keratinocyte associated protein 3
Low tissue specificity
Detected in all
KSR1
ENSSSCG00000017753
ENSG00000141068
Kinase suppressor of ras 1
Low tissue specificity
Detected in all
KTN1
ENSSSCG00000005060
ENSG00000126777
Kinectin
Low tissue specificity
Detected in all
KXD1
ENSSSCG00000013906
ENSG00000105700
KxDL motif containing 1
Tissue enhanced
Detected in all
lens:
166.0
KYAT1
ENSSSCG00000005663
ENSG00000171097
Kynurenine aminotransferase 1
Tissue enhanced
Detected in all
male glands:
29.7
KYAT3
ENSSSCG00000006925
ENSG00000137944
Kynurenine aminotransferase 3
Low tissue specificity
Detected in all
KYNU
ENSSSCG00000015673
ENSG00000115919
Kynureninase
Tissue enhanced
Detected in many
breast:
25.1
liver:
44.6
L1CAM
ENSSSCG00000012787
ENSG00000198910
L1 cell adhesion molecule
Tissue enhanced
Detected in many
ductus deferens:
55.0
kidney:
58.6
vagus nerve:
52.3
L2HGDH
ENSSSCG00000005016
ENSG00000087299
L-2-hydroxyglutarate dehydrogenase
Low tissue specificity
Detected in all
L3HYPDH
ENSSSCG00000037854
ENSG00000126790
Trans-L-3-hydroxyproline dehydratase
Low tissue specificity
Detected in all
L3MBTL2
ENSSSCG00000000066
ENSG00000100395
L3MBTL2, polycomb repressive complex 1 subunit
Low tissue specificity
Detected in all
L3MBTL3
ENSSSCG00000004203
ENSG00000198945
L3MBTL3, histone methyl-lysine binding protein
Tissue enhanced
Detected in all
cartilage:
41.4
LACTB
ENSSSCG00000004569
ENSG00000103642
Serine beta-lactamase-like protein LACTB, mitochondrial
Tissue enhanced
Detected in all
adrenal gland:
36.1
liver:
32.5
LACTB2
ENSSSCG00000006192
ENSG00000147592
Endoribonuclease LACTB2
Low tissue specificity
Detected in all
LAMA1
ENSSSCG00000034767
ENSG00000101680
Laminin subunit alpha 1
Group enriched
Detected in many
lens:
68.3
ovary:
34.5
LAMA2
ENSSSCG00000033894
ENSG00000196569
Laminin subunit alpha 2
Tissue enhanced
Detected in many
heart:
52.7
synovial tissue:
48.0
LAMA3
ENSSSCG00000003709
ENSG00000053747
Laminin subunit alpha 3
Tissue enhanced
Detected in many
mesothelial tissue:
32.6
skin:
31.3
LAMA4
ENSSSCG00000004425
ENSG00000112769
Laminin subunit alpha 4
Low tissue specificity
Detected in many
LAMA5
ENSSSCG00000032761
ENSG00000130702
Laminin subunit alpha 5
Low tissue specificity
Detected in all
LAMB1
ENSSSCG00000015444
ENSG00000091136
Laminin subunit beta 1
Low tissue specificity
Detected in all
LAMB2
ENSSSCG00000011377
ENSG00000172037
Laminin subunit beta 2
Low tissue specificity
Detected in all
LAMC1
ENSSSCG00000015555
ENSG00000135862
Laminin subunit gamma-1 precursor
Low tissue specificity
Detected in all
LAMC2
ENSSSCG00000015556
ENSG00000058085
Laminin subunit gamma 2
Tissue enhanced
Detected in many
stomach:
44.7
LAMC3
ENSSSCG00000005710
ENSG00000050555
Laminin subunit gamma 3
Tissue enhanced
Detected in many
penis:
26.8
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