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Chromosome
1
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MT
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External id
Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
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Cornea
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Dura mater
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Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15765 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
OR10D3
ENSSSCG00000020685
ENSG00000197309
Olfactory receptor family 10 subfamily D member 3 (putative)
Tissue enhanced
Detected in some
epididymis:
1.6
mesothelial tissue:
1.2
testis:
3.5
OR1I1
ENSSSCG00000013828
ENSG00000094661
Olfactory receptor family 1 subfamily I member 1
Tissue enhanced
Detected in some
epididymis:
4.3
fallopian tube:
4.0
OR2S2
ENSSSCG00000039114
ENSG00000278889
Olfactory receptor family 2 subfamily S member 2 (gene/pseudogene)
Tissue enhanced
Detected in some
heart:
3.4
testis:
5.0
OR4D5
ENSSSCG00000015152
ENSG00000171014
Olfactory receptor family 4 subfamily D member 5
Tissue enhanced
Detected in some
aorta:
1.5
cartilage:
1.1
mesothelial tissue:
1.2
OR51E2
ENSSSCG00000014764
ENSG00000167332
Olfactory receptor family 51 subfamily E member 2
Tissue enhanced
Detected in some
large intestine:
6.5
penis:
3.7
OR52B2
ENSSSCG00000014635
ENSG00000255307
Olfactory receptor family 52 subfamily B member 2
Tissue enhanced
Detected in many
breast:
8.1
cartilage:
9.8
fallopian tube:
11.8
OR52W1
ENSSSCG00000035041
ENSG00000175485
Olfactory receptor family 52 subfamily W member 1
Tissue enhanced
Detected in many
cartilage:
11.0
mesothelial tissue:
12.4
OR5AU1
ENSSSCG00000032876
ENSG00000169327
Olfactory receptor family 5 subfamily AU member 1
Tissue enhanced
Detected in many
liver:
10.2
OR6A2
ENSSSCG00000014617
ENSG00000184933
Olfactory receptor family 6 subfamily A member 2
Low tissue specificity
Detected in many
OR6J1
ENSSSCG00000002052
ENSG00000255804
Olfactory receptor family 6 subfamily J member 1 (gene/pseudogene)
Tissue enhanced
Detected in many
skeletal muscle:
10.6
OR6K3
ENSSSCG00000040627
ENSG00000203757
Olfactory receptor family 6 subfamily K member 3
Tissue enhanced
Detected in some
adipose tissue:
2.3
heart:
1.9
lymphoid tissue:
1.8
mesothelial tissue:
1.7
OR6K6
ENSSSCG00000006425
ENSG00000180433
Olfactory receptor family 6 subfamily K member 6
Tissue enriched
Detected in some
lymphoid tissue:
14.1
OR6N1
ENSSSCG00000006424
ENSG00000197403
Olfactory receptor family 6 subfamily N member 1
Tissue enhanced
Detected in some
adipose tissue:
6.6
lymphoid tissue:
8.1
mesothelial tissue:
4.6
OR6N2
ENSSSCG00000006423
ENSG00000188340
Olfactory receptor family 6 subfamily N member 2
Tissue enhanced
Detected in many
adipose tissue:
11.9
lymphoid tissue:
8.7
OR6T1
ENSSSCG00000015153
ENSG00000181499
Olfactory receptor family 6 subfamily T member 1
Tissue enhanced
Detected in some
brain:
1.2
cartilage:
1.2
mesothelial tissue:
1.1
testis:
1.1
OR6V1
ENSSSCG00000024155
ENSG00000225781
Olfactory receptor family 6 subfamily V member 1
Tissue enhanced
Detected in many
liver:
21.9
OR6X1
ENSSSCG00000015146
ENSG00000221931
Olfactory receptor family 6 subfamily X member 1
Tissue enhanced
Detected in some
heart:
3.9
mesothelial tissue:
3.8
ORAI1
ENSSSCG00000034510
ENSG00000276045
Calcium release-activated calcium channel protein 1
Low tissue specificity
Detected in all
ORAI2
ENSSSCG00000023912
ENSG00000160991
ORAI calcium release-activated calcium modulator 2
Low tissue specificity
Detected in all
ORAI3
ENSSSCG00000007770
ENSG00000175938
ORAI calcium release-activated calcium modulator 3
Low tissue specificity
Detected in all
ORAOV1
ENSSSCG00000012874
ENSG00000149716
Oral cancer overexpressed 1
Low tissue specificity
Detected in all
ORC2
ENSSSCG00000016098
ENSG00000115942
Origin recognition complex subunit 2
Low tissue specificity
Detected in all
ORC3
ENSSSCG00000004306
ENSG00000135336
Origin recognition complex subunit 3
Low tissue specificity
Detected in all
ORC4
ENSSSCG00000015668
ENSG00000115947
Origin recognition complex subunit 4
Low tissue specificity
Detected in all
ORC5
ENSSSCG00000015427
ENSG00000164815
Origin recognition complex subunit 5
Low tissue specificity
Detected in all
ORC6
ENSSSCG00000024443
ENSG00000091651
Origin recognition complex subunit 6
Low tissue specificity
Detected in all
ORMDL3
ENSSSCG00000017492
ENSG00000172057
ORMDL sphingolipid biosynthesis regulator 3
Tissue enhanced
Detected in all
adipose tissue:
90.6
liver:
67.4
OS9
ENSSSCG00000035875
ENSG00000135506
OS9, endoplasmic reticulum lectin
Low tissue specificity
Detected in all
OSBP
ENSSSCG00000013125
ENSG00000110048
Oxysterol binding protein
Low tissue specificity
Detected in all
OSBPL10
ENSSSCG00000011230
ENSG00000144645
Oxysterol binding protein like 10
Tissue enhanced
Detected in all
testis:
40.0
OSBPL11
ENSSSCG00000026753
ENSG00000144909
Oxysterol binding protein like 11
Low tissue specificity
Detected in all
OSBPL1A
ENSSSCG00000003712
ENSG00000141447
Oxysterol binding protein like 1A
Tissue enhanced
Detected in all
brain:
50.2
lens:
90.9
OSBPL2
ENSSSCG00000036835
ENSG00000130703
Oxysterol binding protein like 2
Low tissue specificity
Detected in all
OSBPL3
ENSSSCG00000016715
ENSG00000070882
Oxysterol binding protein like 3
Low tissue specificity
Detected in many
OSBPL5
ENSSSCG00000012862
ENSG00000021762
Oxysterol binding protein like 5
Low tissue specificity
Detected in all
OSBPL6
ENSSSCG00000023133
ENSG00000079156
Oxysterol binding protein like 6
Low tissue specificity
Detected in all
OSBPL7
ENSSSCG00000017518
ENSG00000006025
Oxysterol binding protein like 7
Low tissue specificity
Detected in many
OSBPL8
ENSSSCG00000027503
ENSG00000091039
Oxysterol binding protein like 8
Low tissue specificity
Detected in all
OSBPL9
ENSSSCG00000021292
ENSG00000117859
Oxysterol binding protein like 9
Low tissue specificity
Detected in all
OSCAR
ENSSSCG00000003259
ENSG00000170909
Osteoclast associated, immunoglobulin-like receptor
Low tissue specificity
Detected in all
OSCP1
ENSSSCG00000036709
ENSG00000116885
Organic solute carrier partner 1
Tissue enhanced
Detected in many
choroid plexus:
26.6
OSER1
ENSSSCG00000022714
ENSG00000132823
Oxidative stress responsive serine rich 1
Low tissue specificity
Detected in all
OSGEP
ENSSSCG00000002138
ENSG00000092094
O-sialoglycoprotein endopeptidase
Low tissue specificity
Detected in all
OSGEPL1
ENSSSCG00000016043
ENSG00000128694
O-sialoglycoprotein endopeptidase like 1
Low tissue specificity
Detected in all
OSGIN1
ENSSSCG00000032115
ENSG00000140961
Oxidative stress induced growth inhibitor 1
Tissue enhanced
Detected in many
adrenal gland:
46.7
liver:
67.6
testis:
35.1
OSGIN2
ENSSSCG00000021184
ENSG00000164823
Oxidative stress induced growth inhibitor family member 2
Tissue enriched
Detected in all
lens:
91.5
OSM
ENSSSCG00000009997
ENSG00000099985
Oncostatin M
Tissue enhanced
Detected in many
bone marrow:
10.2
OSMR
ENSSSCG00000016851
ENSG00000145623
Oncostatin M receptor
Low tissue specificity
Detected in all
OSR1
ENSSSCG00000008606
ENSG00000143867
Odd-skipped related transciption factor 1
Tissue enhanced
Detected in many
urinary bladder:
50.0
OSR2
ENSSSCG00000006073
ENSG00000164920
Odd-skipped related transciption factor 2
Tissue enhanced
Detected in many
cervix:
47.6
ductus deferens:
50.6
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