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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16395 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EPSTI1
ENSSSCG00000037572
ENSG00000133106
Epithelial stromal interaction 1
Tissue enhanced
Detected in many
small intestine:
25.4
ERAL1
ENSSSCG00000017776
ENSG00000132591
Era like 12S mitochondrial rRNA chaperone 1
Low tissue specificity
Detected in all
ERAP1
ENSSSCG00000014171
ENSG00000164307
Endoplasmic reticulum aminopeptidase 1
Low tissue specificity
Detected in all
ERAP2
ENSSSCG00000027860
ENSG00000164308
Endoplasmic reticulum aminopeptidase 2
Tissue enhanced
Detected in many
lymphoid tissue:
39.7
ERBB2
ENSSSCG00000017497
ENSG00000141736
Receptor tyrosine-protein kinase erbB-2 precursor
Low tissue specificity
Detected in all
ERBB4
ENSSSCG00000016160
ENSG00000178568
Erb-b2 receptor tyrosine kinase 4
Tissue enhanced
Detected in many
brain:
23.5
heart:
35.7
ERBIN
ENSSSCG00000016954
ENSG00000112851
Erbb2 interacting protein
Low tissue specificity
Detected in all
ERC1
ENSSSCG00000000755
ENSG00000082805
ELKS/RAB6-interacting/CAST family member 1
Low tissue specificity
Detected in all
ERC2
ENSSSCG00000024417
ENSG00000187672
ELKS/RAB6-interacting/CAST family member 2
Tissue enhanced
Detected in many
brain:
31.7
pituitary gland:
12.4
ERCC1
ENSSSCG00000036455
ENSG00000012061
DNA excision repair protein ERCC-1
Low tissue specificity
Detected in all
ERCC2
ENSSSCG00000039929
ENSG00000104884
ERCC excision repair 2, TFIIH core complex helicase subunit
Tissue enhanced
Detected in all
retina:
46.7
ERCC3
ENSSSCG00000015721
ENSG00000163161
ERCC excision repair 3, TFIIH core complex helicase subunit
Low tissue specificity
Detected in all
ERCC4
ENSSSCG00000007881
ENSG00000175595
ERCC excision repair 4, endonuclease catalytic subunit
Low tissue specificity
Detected in all
ERCC5
ENSSSCG00000032046
ENSG00000134899
ERCC excision repair 5, endonuclease
Low tissue specificity
Detected in all
ERCC6
ENSSSCG00000010391
ENSG00000225830
ERCC excision repair 6, chromatin remodeling factor
Low tissue specificity
Detected in all
ERCC6L
ENSSSCG00000021834
ENSG00000186871
ERCC excision repair 6 like, spindle assembly checkpoint helicase
Tissue enhanced
Detected in many
lymphoid tissue:
10.2
testis:
9.3
ERCC8
ENSSSCG00000016934
ENSG00000049167
ERCC excision repair 8, CSA ubiquitin ligase complex subunit
Low tissue specificity
Detected in all
EREG
ENSSSCG00000038185
ENSG00000124882
Epiregulin
Low tissue specificity
Detected in all
ERF
ENSSSCG00000032154
ENSG00000105722
ETS2 repressor factor
Low tissue specificity
Detected in all
ERFE
ENSSSCG00000016337
ENSG00000178752
Erythroferrone
Tissue enhanced
Detected in many
lymphoid tissue:
12.5
ERG
ENSSSCG00000022318
ENSG00000157554
Transcriptional regulator ERG
Tissue enhanced
Detected in many
cartilage:
56.5
ERG28
ENSSSCG00000036494
ENSG00000133935
Probable ergosterol biosynthetic protein 28 precursor
Tissue enhanced
Detected in all
liver:
79.3
ERGIC1
ENSSSCG00000016988
ENSG00000113719
Endoplasmic reticulum-golgi intermediate compartment 1
Tissue enhanced
Detected in all
male glands:
91.8
ERGIC2
ENSSSCG00000000536
ENSG00000087502
Endoplasmic reticulum-Golgi intermediate compartment protein 2
Tissue enhanced
Detected in all
male glands:
81.7
ERGIC3
ENSSSCG00000034045
ENSG00000125991
ERGIC and golgi 3
Low tissue specificity
Detected in all
ERH
ENSSSCG00000002307
ENSG00000100632
Enhancer of rudimentary homolog
Low tissue specificity
Detected in all
ERI1
ENSSSCG00000033634
ENSG00000104626
Exoribonuclease 1
Tissue enriched
Detected in all
lens:
57.1
ERICH2
ENSSSCG00000035909
ENSG00000204334
Glutamate rich 2
Tissue enhanced
Detected in all
testis:
39.5
ERICH4
ENSSSCG00000040022
ENSG00000204978
Glutamate rich 4
Tissue enhanced
Detected in many
kidney:
13.1
small intestine:
14.2
ERICH6
ENSSSCG00000022706
ENSG00000163645
Glutamate rich 6
Tissue enhanced
Detected in many
testis:
27.6
ERLEC1
ENSSSCG00000008414
ENSG00000068912
Endoplasmic reticulum lectin 1
Low tissue specificity
Detected in all
ERLIN2
ENSSSCG00000039480
ENSG00000147475
Erlin-2 precursor
Low tissue specificity
Detected in all
ERMAP
ENSSSCG00000021745
ENSG00000164010
Erythroblast membrane associated protein (Scianna blood group)
Tissue enhanced
Detected in many
dura mater:
20.5
ERMARD
ENSSSCG00000004010
ENSG00000130023
ER membrane associated RNA degradation
Low tissue specificity
Detected in all
ERMP1
ENSSSCG00000005207
ENSG00000099219
Endoplasmic reticulum metallopeptidase 1
Low tissue specificity
Detected in all
ERN1
ENSSSCG00000017279
ENSG00000178607
Endoplasmic reticulum to nucleus signaling 1
Tissue enhanced
Detected in all
male glands:
88.8
salivary gland:
39.2
ERN2
ENSSSCG00000040637
ENSG00000134398
Endoplasmic reticulum to nucleus signaling 2
Tissue enhanced
Detected in many
esophagus:
43.7
male glands:
43.9
stomach:
58.7
ERO1A
ENSSSCG00000005037
ENSG00000197930
ERO1-like protein alpha
Low tissue specificity
Detected in all
ERO1B
ENSSSCG00000010148
ENSG00000086619
Endoplasmic reticulum oxidoreductase 1 beta
Tissue enhanced
Detected in all
ovary:
68.7
testis:
50.8
ERP27
ENSSSCG00000000605
ENSG00000139055
Endoplasmic reticulum protein 27
Low tissue specificity
Detected in all
ERP29
ENSSSCG00000009888
ENSG00000089248
Endoplasmic reticulum protein 29
Low tissue specificity
Detected in all
ERP44
ENSSSCG00000040634
ENSG00000023318
Endoplasmic reticulum resident protein 44 precursor
Low tissue specificity
Detected in all
ERRFI1
ENSSSCG00000035774
ENSG00000116285
ERBB receptor feedback inhibitor 1
Tissue enhanced
Detected in all
cartilage:
241.4
liver:
92.9
synovial tissue:
95.5
ESAM
ENSSSCG00000015200
ENSG00000149564
Endothelial cell adhesion molecule
Low tissue specificity
Detected in many
ESCO1
ENSSSCG00000003700
ENSG00000141446
Establishment of sister chromatid cohesion N-acetyltransferase 1
Low tissue specificity
Detected in all
ESCO2
ENSSSCG00000009670
ENSG00000171320
Establishment of sister chromatid cohesion N-acetyltransferase 2
Group enriched
Detected in many
lymphoid tissue:
10.9
testis:
37.1
ESD
ENSSSCG00000009407
ENSG00000139684
S-formylglutathione hydrolase
Tissue enhanced
Detected in all
lens:
91.2
ESF1
ENSSSCG00000007077
ENSG00000089048
ESF1 nucleolar pre-rRNA processing protein homolog
Low tissue specificity
Detected in all
ESM1
ENSSSCG00000016900
ENSG00000164283
Endothelial cell specific molecule 1
Tissue enriched
Detected in many
pineal gland:
129.4
ESPNL
ENSSSCG00000016335
ENSG00000144488
Espin like
Tissue enhanced
Detected in many
liver:
8.0
lymphoid tissue:
7.2
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