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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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16395 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CLDN7
ENSSSCG00000017934
ENSG00000181885
Claudin-7 precursor
Tissue enhanced
Detected in many
large intestine:
56.5
male glands:
40.9
CLDN8
ENSSSCG00000012030
ENSG00000156284
Claudin-8
Tissue enhanced
Detected in many
breast:
64.0
kidney:
44.5
male glands:
37.7
thyroid gland:
54.2
CLDN9
ENSSSCG00000021536
ENSG00000213937
Claudin-9
Tissue enhanced
Detected in many
pituitary gland:
31.2
CLDND1
ENSSSCG00000011980
ENSG00000080822
Claudin domain-containing protein 1
Low tissue specificity
Detected in all
CLEC11A
ENSSSCG00000036814
ENSG00000105472
C-type lectin domain containing 11A
Low tissue specificity
Detected in all
CLEC12A
ENSSSCG00000039287
ENSG00000172322
C-type lectin domain family 12 member A
Low tissue specificity
Detected in all
CLEC14A
ENSSSCG00000023760
ENSG00000176435
C-type lectin domain containing 14A
Low tissue specificity
Detected in many
CLEC16A
ENSSSCG00000026569
ENSG00000038532
C-type lectin domain containing 16A
Low tissue specificity
Detected in all
CLEC17A
ENSSSCG00000013777
ENSG00000187912
C-type lectin domain containing 17A
Tissue enriched
Detected in many
lymphoid tissue:
33.0
CLEC1A
ENSSSCG00000000649
ENSG00000150048
C-type lectin domain family 1 member A
Low tissue specificity
Detected in many
CLEC2B
ENSSSCG00000000656
ENSG00000110852
Uncharacterized protein LOC100520839
Low tissue specificity
Detected in all
CLEC2L
ENSSSCG00000038147
ENSG00000236279
C-type lectin domain family 2 member L
Group enriched
Detected in some
brain:
30.5
choroid plexus:
8.1
heart:
26.3
retina:
8.6
CLEC3B
ENSSSCG00000011299
ENSG00000163815
C-type lectin domain family 3 member B
Tissue enhanced
Detected in many
adipose tissue:
80.1
CLEC4G
ENSSSCG00000039007
ENSG00000182566
C-type lectin domain family 4 member G
Group enriched
Detected in all
liver:
53.4
lymphoid tissue:
26.1
CLEC5A
ENSSSCG00000021933
ENSG00000258227
C-type lectin domain family 5 member A
Tissue enhanced
Detected in many
ovary:
7.9
CLEC7A
ENSSSCG00000000648
ENSG00000172243
C-type lectin domain family 7 member A
Tissue enhanced
Detected in many
lung:
9.6
CLGN
ENSSSCG00000026360
ENSG00000153132
Calmegin precursor
Group enriched
Detected in many
choroid plexus:
20.8
male glands:
21.9
testis:
81.2
CLHC1
ENSSSCG00000008402
ENSG00000162994
Clathrin heavy chain linker domain containing 1
Tissue enhanced
Detected in many
fallopian tube:
36.3
CLIC2
ENSSSCG00000039998
ENSG00000155962
Chloride intracellular channel protein 2
Low tissue specificity
Detected in all
CLIC3
ENSSSCG00000037395
ENSG00000169583
Chloride intracellular channel 3
Tissue enhanced
Detected in many
cornea:
37.8
thyroid gland:
75.4
CLIC4
ENSSSCG00000038994
ENSG00000169504
Chloride intracellular channel 4
Low tissue specificity
Detected in all
CLIC5
ENSSSCG00000037416
ENSG00000112782
Chloride intracellular channel 5
Tissue enriched
Detected in many
lens:
235.3
CLINT1
ENSSSCG00000017047
ENSG00000113282
Clathrin interactor 1
Tissue enhanced
Detected in all
male glands:
88.1
CLIP1
ENSSSCG00000009793
ENSG00000130779
CAP-Gly domain containing linker protein 1
Low tissue specificity
Detected in all
CLIP4
ENSSSCG00000008535
ENSG00000115295
CAP-Gly domain containing linker protein family member 4
Tissue enhanced
Detected in many
testis:
43.0
vagus nerve:
34.0
CLK1
ENSSSCG00000016095
ENSG00000013441
Dual specificity protein kinase CLK1
Low tissue specificity
Detected in all
CLK2
ENSSSCG00000006519
ENSG00000176444
CDC like kinase 2
Low tissue specificity
Detected in all
CLK3
ENSSSCG00000001904
ENSG00000179335
CDC like kinase 3
Low tissue specificity
Detected in all
CLK4
ENSSSCG00000014028
ENSG00000113240
CDC like kinase 4
Low tissue specificity
Detected in all
CLMN
ENSSSCG00000002494
ENSG00000165959
Calmin (calponin-like, transmembrane)
Tissue enhanced
Detected in all
testis:
60.7
CLMP
ENSSSCG00000022961
ENSG00000166250
CXADR like membrane protein
Tissue enhanced
Detected in all
cervix:
64.3
CLN6
ENSSSCG00000004957
ENSG00000128973
Ceroid-lipofuscinosis neuronal protein 6
Low tissue specificity
Detected in all
CLNK
ENSSSCG00000022448
ENSG00000109684
Cytokine dependent hematopoietic cell linker
Tissue enhanced
Detected in many
lymphoid tissue:
15.1
salivary gland:
8.3
stomach:
7.5
CLNS1A
ENSSSCG00000014881
ENSG00000074201
Chloride nucleotide-sensitive channel 1A
Low tissue specificity
Detected in all
CLOCK
ENSSSCG00000008909
ENSG00000134852
Clock circadian regulator
Low tissue specificity
Detected in all
CLP1
ENSSSCG00000031442
ENSG00000172409
Cleavage and polyadenylation factor I subunit 1
Low tissue specificity
Detected in all
CLPB
ENSSSCG00000036887
ENSG00000162129
ClpB homolog, mitochondrial AAA ATPase chaperonin
Tissue enriched
Detected in all
testis:
84.4
CLPP
ENSSSCG00000038079
ENSG00000125656
Caseinolytic mitochondrial matrix peptidase proteolytic subunit
Low tissue specificity
Detected in all
CLPTM1
ENSSSCG00000003085
ENSG00000104853
CLPTM1, transmembrane protein
Low tissue specificity
Detected in all
CLPTM1L
ENSSSCG00000017119
ENSG00000049656
CLPTM1 like
Low tissue specificity
Detected in all
CLPX
ENSSSCG00000004927
ENSG00000166855
Caseinolytic mitochondrial matrix peptidase chaperone subunit
Low tissue specificity
Detected in all
CLRN3
ENSSSCG00000010753
ENSG00000180745
Clarin 3
Tissue enhanced
Detected in many
kidney:
21.1
large intestine:
34.6
small intestine:
28.1
CLSPN
ENSSSCG00000003628
ENSG00000092853
Claspin
Low tissue specificity
Detected in all
CLSTN1
ENSSSCG00000003396
ENSG00000171603
Calsyntenin 1
Tissue enhanced
Detected in all
brain:
86.7
CLSTN2
ENSSSCG00000011666
ENSG00000158258
Calsyntenin 2
Tissue enhanced
Detected in many
brain:
29.4
CLSTN3
ENSSSCG00000000672
ENSG00000139182
Calsyntenin 3
Group enriched
Detected in many
brain:
58.8
pineal gland:
44.5
CLTA
ENSSSCG00000037131
ENSG00000122705
Clathrin light chain A
Low tissue specificity
Detected in all
CLTB
ENSSSCG00000014058
ENSG00000175416
Clathrin light chain B
Low tissue specificity
Detected in all
CLTRN
ENSSSCG00000035893
ENSG00000147003
Collectrin, amino acid transport regulator
Group enriched
Detected in many
choroid plexus:
29.1
kidney:
57.5
CLU
ENSSSCG00000009668
ENSG00000120885
Clusterin Clusterin beta chain Clusterin alpha chain
Tissue enhanced
Detected in all
cartilage:
638.2
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