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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16395 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACTN1
ENSSSCG00000036702
ENSG00000072110
Alpha-actinin-1
Tissue enhanced
Detected in all
smooth muscle:
150.4
ACTN2
ENSSSCG00000010144
ENSG00000077522
Alpha-actinin-2
Group enriched
Detected in many
heart:
140.1
skeletal muscle:
224.2
ACTN3
ENSSSCG00000038323
ENSG00000248746
Actinin alpha 3 (gene/pseudogene)
Tissue enriched
Detected in some
skeletal muscle:
250.4
ACTN4
ENSSSCG00000002965
ENSG00000130402
Actinin alpha 4
Low tissue specificity
Detected in all
ACTR10
ENSSSCG00000022299
ENSG00000131966
Actin related protein 10 homolog
Tissue enhanced
Detected in all
male glands:
84.2
ACTR1A
ENSSSCG00000010585
ENSG00000138107
ARP1 actin related protein 1 homolog A
Low tissue specificity
Detected in all
ACTR1B
ENSSSCG00000008194
ENSG00000115073
ARP1 actin related protein 1 homolog B
Low tissue specificity
Detected in all
ACTR2
ENSSSCG00000008358
ENSG00000138071
Actin-related protein 2
Low tissue specificity
Detected in all
ACTR3
ENSSSCG00000015710
ENSG00000115091
Actin-related protein 3
Low tissue specificity
Detected in all
ACTR3B
ENSSSCG00000016426
ENSG00000133627
ARP3 actin related protein 3 homolog B
Low tissue specificity
Detected in all
ACTR5
ENSSSCG00000007349
ENSG00000101442
ARP5 actin related protein 5 homolog
Low tissue specificity
Detected in all
ACTR6
ENSSSCG00000025682
ENSG00000075089
ARP6 actin related protein 6 homolog
Low tissue specificity
Detected in all
ACTR8
ENSSSCG00000011458
ENSG00000113812
ARP8 actin related protein 8 homolog
Low tissue specificity
Detected in all
ACVR1
ENSSSCG00000015874
ENSG00000115170
Activin A receptor type 1
Tissue enhanced
Detected in all
cartilage:
70.9
ACVR1B
ENSSSCG00000000233
ENSG00000135503
Activin receptor type-1B precursor
Low tissue specificity
Detected in all
ACVR2A
ENSSSCG00000015669
ENSG00000121989
Activin receptor type-2A precursor
Tissue enhanced
Detected in all
lens:
65.2
ACVR2B
ENSSSCG00000011257
ENSG00000114739
Activin receptor type-2B precursor
Tissue enhanced
Detected in all
skeletal muscle:
35.6
ACVRL1
ENSSSCG00000000232
ENSG00000139567
Activin A receptor like type 1
Low tissue specificity
Detected in many
ACYP2
ENSSSCG00000025224
ENSG00000170634
Acylphosphatase 2
Tissue enhanced
Detected in many
brain:
31.1
skeletal muscle:
48.5
ADA
ENSSSCG00000021255
ENSG00000196839
Adenosine deaminase
Tissue enhanced
Detected in many
mouth:
124.3
small intestine:
43.7
stomach:
31.6
ADA2
ENSSSCG00000035218
ENSG00000093072
Adenosine deaminase 2 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
41.2
ADAL
ENSSSCG00000004710
ENSG00000168803
Adenosine deaminase like
Low tissue specificity
Detected in all
ADAM10
ENSSSCG00000004595
ENSG00000137845
Disintegrin and metalloproteinase domain-containing protein 10 precursor
Low tissue specificity
Detected in all
ADAM11
ENSSSCG00000017349
ENSG00000073670
ADAM metallopeptidase domain 11
Tissue enhanced
Detected in all
brain:
25.4
ADAM12
ENSSSCG00000010746
ENSG00000148848
ADAM metallopeptidase domain 12
Tissue enhanced
Detected in many
ovary:
64.8
ADAM15
ENSSSCG00000006533
ENSG00000143537
ADAM metallopeptidase domain 15
Low tissue specificity
Detected in all
ADAM17
ENSSSCG00000008641
ENSG00000151694
Disintegrin and metalloproteinase domain-containing protein 17 precursor
Low tissue specificity
Detected in all
ADAM19
ENSSSCG00000017052
ENSG00000135074
ADAM metallopeptidase domain 19
Low tissue specificity
Detected in many
ADAM2
ENSSSCG00000034623
Disintegrin and metalloproteinase domain-containing protein 2 precursor
Tissue enriched
Detected in some
testis:
114.1
ADAM20
ENSSSCG00000034126
ENSG00000134007
ADAM metallopeptidase domain 20
Tissue enriched
Detected in some
testis:
19.1
ADAM21
ENSSSCG00000002322
ENSG00000139985
ADAM metallopeptidase domain 21
Tissue enriched
Detected in some
testis:
36.5
ADAM28
ENSSSCG00000009644
ENSG00000042980
ADAM metallopeptidase domain 28
Tissue enhanced
Detected in all
epididymis:
81.1
urinary bladder:
46.5
ADAM29
ENSSSCG00000009697
ENSG00000168594
ADAM metallopeptidase domain 29
Group enriched
Detected in some
epididymis:
25.8
male glands:
23.2
testis:
32.5
ADAM33
ENSSSCG00000007145
ENSG00000149451
ADAM metallopeptidase domain 33
Tissue enhanced
Detected in many
cervix:
43.8
mesothelial tissue:
42.3
ADAM7
ENSSSCG00000009646
ENSG00000069206
ADAM metallopeptidase domain 7
Tissue enriched
Detected in many
epididymis:
248.0
ADAM8
ENSSSCG00000010772
ENSG00000151651
ADAM metallopeptidase domain 8
Tissue enhanced
Detected in many
ovary:
19.1
ADAM9
ENSSSCG00000015808
ENSG00000168615
ADAM metallopeptidase domain 9
Low tissue specificity
Detected in all
ADAMTS1
ENSSSCG00000012026
ENSG00000154734
A disintegrin and metalloproteinase with thrombospondin motifs 1 precursor
Tissue enhanced
Detected in many
aorta:
54.6
gallbladder:
47.1
mesothelial tissue:
50.9
ADAMTS10
ENSSSCG00000026994
ENSG00000142303
A disintegrin and metalloproteinase with thrombospondin motifs 10 precursor
Low tissue specificity
Detected in many
ADAMTS12
ENSSSCG00000016816
ENSG00000151388
ADAM metallopeptidase with thrombospondin type 1 motif 12
Low tissue specificity
Detected in many
ADAMTS14
ENSSSCG00000010272
ENSG00000138316
ADAM metallopeptidase with thrombospondin type 1 motif 14
Tissue enhanced
Detected in many
cornea:
22.4
ADAMTS15
ENSSSCG00000015250
ENSG00000166106
ADAM metallopeptidase with thrombospondin type 1 motif 15
Low tissue specificity
Detected in many
ADAMTS16
ENSSSCG00000017109
ENSG00000145536
ADAM metallopeptidase with thrombospondin type 1 motif 16
Group enriched
Detected in many
adipose tissue:
7.9
ductus deferens:
7.0
epididymis:
8.9
kidney:
21.0
mesothelial tissue:
25.6
ADAMTS17
ENSSSCG00000038452
ENSG00000140470
ADAM metallopeptidase with thrombospondin type 1 motif 17
Tissue enriched
Detected in many
lens:
63.4
ADAMTS19
ENSSSCG00000014259
ENSG00000145808
ADAM metallopeptidase with thrombospondin type 1 motif 19
Tissue enhanced
Detected in many
adrenal gland:
31.3
cervix:
46.0
lens:
28.4
ADAMTS2
ENSSSCG00000024043
ENSG00000087116
ADAM metallopeptidase with thrombospondin type 1 motif 2
Tissue enhanced
Detected in many
mesothelial tissue:
31.9
ADAMTS20
ENSSSCG00000000795
ENSG00000173157
A disintegrin and metalloproteinase with thrombospondin motifs 20 precursor
Tissue enhanced
Detected in many
heart:
36.3
pineal gland:
27.4
vagus nerve:
37.2
ADAMTS3
ENSSSCG00000038180
ENSG00000156140
ADAM metallopeptidase with thrombospondin type 1 motif 3
Tissue enhanced
Detected in many
cartilage:
37.5
ADAMTS5
ENSSSCG00000012027
ENSG00000154736
ADAM metallopeptidase with thrombospondin type 1 motif 5
Tissue enhanced
Detected in many
adipose tissue:
42.4
cervix:
32.1
ADAMTS6
ENSSSCG00000016943
ENSG00000049192
ADAM metallopeptidase with thrombospondin type 1 motif 6
Tissue enhanced
Detected in all
cartilage:
53.8
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