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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16395 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ANAPC13
ENSSSCG00000033057
ENSG00000129055
Anaphase-promoting complex subunit 13
Tissue enhanced
Detected in all
lens:
87.0
ANAPC15
ENSSSCG00000014806
ENSG00000110200
Anaphase promoting complex subunit 15
Low tissue specificity
Detected in all
ANAPC16
ENSSSCG00000037728
ENSG00000166295
Anaphase-promoting complex subunit 16
Low tissue specificity
Detected in all
ANAPC2
ENSSSCG00000032828
ENSG00000176248
Anaphase promoting complex subunit 2
Low tissue specificity
Detected in all
ANAPC4
ENSSSCG00000025902
ENSG00000053900
Anaphase promoting complex subunit 4
Low tissue specificity
Detected in all
ANAPC5
ENSSSCG00000009814
ENSG00000089053
Anaphase promoting complex subunit 5
Low tissue specificity
Detected in all
ANAPC7
ENSSSCG00000030222
ENSG00000196510
Anaphase promoting complex subunit 7
Low tissue specificity
Detected in all
ANG
ENSSSCG00000031538
ENSG00000214274
Angiogenin
Tissue enhanced
Detected in many
liver:
105.2
ANGEL1
ENSSSCG00000002390
ENSG00000013523
Angel homolog 1
Tissue enhanced
Detected in all
testis:
42.9
ANGEL2
ENSSSCG00000015588
ENSG00000174606
Angel homolog 2
Low tissue specificity
Detected in all
ANGPT1
ENSSSCG00000006035
ENSG00000154188
Angiopoietin-1 precursor
Tissue enhanced
Detected in many
brain:
18.9
pituitary gland:
19.1
ANGPT2
ENSSSCG00000015753
ENSG00000091879
Angiopoietin-2 precursor
Low tissue specificity
Detected in many
ANGPT4
ENSSSCG00000007198
ENSG00000101280
Angiopoietin 4
Tissue enhanced
Detected in all
penis:
29.1
ANGPTL1
ENSSSCG00000015522
ENSG00000116194
Angiopoietin-related protein 1 precursor
Tissue enhanced
Detected in many
smooth muscle:
52.2
ANGPTL2
ENSSSCG00000005608
ENSG00000136859
Angiopoietin-related protein 2 precursor
Tissue enhanced
Detected in many
cartilage:
130.4
ANGPTL3
ENSSSCG00000003819
ENSG00000132855
Angiopoietin-related protein 3 precursor
Tissue enriched
Detected in some
liver:
97.0
ANGPTL4
ENSSSCG00000013599
ENSG00000167772
Angiopoietin-related protein 4
Tissue enhanced
Detected in many
adipose tissue:
47.6
aorta:
47.4
liver:
62.6
ovary:
66.6
ANGPTL5
ENSSSCG00000014978
ENSG00000187151
Angiopoietin like 5
Tissue enhanced
Detected in all
dura mater:
19.4
ANGPTL6
ENSSSCG00000013663
ENSG00000130812
Angiopoietin like 6
Group enriched
Detected in some
cartilage:
10.9
liver:
27.5
testis:
9.1
ANGPTL7
ENSSSCG00000003414
ENSG00000171819
Angiopoietin-related protein 7 precursor
Tissue enhanced
Detected in many
cornea:
147.3
vagus nerve:
43.5
ANK1
ENSSSCG00000007022
ENSG00000029534
Ankyrin 1
Group enriched
Detected in many
brain:
25.8
heart:
50.3
skeletal muscle:
67.1
ANK2
ENSSSCG00000009125
ENSG00000145362
Ankyrin 2
Tissue enhanced
Detected in many
brain:
39.6
lens:
88.5
ANKAR
ENSSSCG00000016042
ENSG00000151687
Ankyrin and armadillo repeat containing
Tissue enhanced
Detected in many
choroid plexus:
11.1
testis:
16.5
ANKDD1A
ENSSSCG00000004545
ENSG00000166839
Ankyrin repeat and death domain containing 1A
Tissue enhanced
Detected in many
brain:
23.8
breast:
15.0
ANKDD1B
ENSSSCG00000014083
ENSG00000189045
Ankyrin repeat and death domain containing 1B
Tissue enhanced
Detected in all
stomach:
29.3
ANKEF1
ENSSSCG00000007063
ENSG00000132623
Ankyrin repeat and EF-hand domain containing 1
Tissue enhanced
Detected in some
male glands:
18.0
testis:
35.6
ANKFY1
ENSSSCG00000017877
ENSG00000185722
Ankyrin repeat and FYVE domain containing 1
Low tissue specificity
Detected in all
ANKH
ENSSSCG00000016784
ENSG00000154122
ANKH inorganic pyrophosphate transport regulator
Tissue enriched
Detected in many
cartilage:
124.6
ANKHD1
ENSSSCG00000014364
ENSG00000131503,ENSG00000254996
Ankyrin repeat and KH domain-containing protein 1
Low tissue specificity
Detected in all
ANKIB1
ENSSSCG00000015314
ENSG00000001629
Ankyrin repeat and IBR domain containing 1
Low tissue specificity
Detected in all
ANKLE1
ENSSSCG00000037099
ENSG00000160117
Ankyrin repeat and LEM domain containing 1
Tissue enhanced
Detected in many
dura mater:
11.3
lymphoid tissue:
12.9
upper respiratory system:
10.5
ANKLE2
ENSSSCG00000026781
ENSG00000176915
Ankyrin repeat and LEM domain containing 2
Low tissue specificity
Detected in all
ANKMY1
ENSSSCG00000016365
ENSG00000144504
Ankyrin repeat and MYND domain containing 1
Low tissue specificity
Detected in all
ANKMY2
ENSSSCG00000015360
ENSG00000106524
Ankyrin repeat and MYND domain-containing protein 2
Low tissue specificity
Detected in all
ANKRA2
ENSSSCG00000014070
ENSG00000164331
Ankyrin repeat family A member 2
Low tissue specificity
Detected in all
ANKRD10
ENSSSCG00000033732
ENSG00000088448
Ankyrin repeat domain-containing protein 10
Low tissue specificity
Detected in all
ANKRD11
ENSSSCG00000039541
ENSG00000167522
Ankyrin repeat domain 11
Tissue enhanced
Detected in all
stomach:
74.9
ANKRD12
ENSSSCG00000003682
ENSG00000101745
Ankyrin repeat domain 12
Low tissue specificity
Detected in all
ANKRD13A
ENSSSCG00000009924
ENSG00000076513
Ankyrin repeat domain 13A
Low tissue specificity
Detected in all
ANKRD13B
ENSSSCG00000017793
ENSG00000198720
Ankyrin repeat domain 13B
Tissue enhanced
Detected in all
skeletal muscle:
42.9
ANKRD13C
ENSSSCG00000003790
ENSG00000118454
Ankyrin repeat domain 13C
Low tissue specificity
Detected in all
ANKRD13D
ENSSSCG00000012917
ENSG00000172932
Ankyrin repeat domain 13D
Low tissue specificity
Detected in all
ANKRD16
ENSSSCG00000028790
ENSG00000134461
Ankyrin repeat domain 16
Low tissue specificity
Detected in all
ANKRD17
ENSSSCG00000024592
ENSG00000132466
Ankyrin repeat domain-containing protein 17
Low tissue specificity
Detected in all
ANKRD2
ENSSSCG00000010522
ENSG00000165887
Ankyrin repeat domain 2
Tissue enriched
Detected in all
skeletal muscle:
79.2
ANKRD22
ENSSSCG00000010445
ENSG00000152766
Ankyrin repeat domain 22
Tissue enhanced
Detected in many
large intestine:
33.2
small intestine:
17.6
stomach:
15.9
ANKRD23
ENSSSCG00000008200
ENSG00000163126
Ankyrin repeat domain-containing protein 23
Group enriched
Detected in some
heart:
31.1
skeletal muscle:
108.6
ANKRD24
ENSSSCG00000013497
ENSG00000089847
Ankyrin repeat domain 24
Low tissue specificity
Detected in all
ANKRD28
ENSSSCG00000011194
ENSG00000206560
Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
Tissue enhanced
Detected in all
male glands:
55.5
ANKRD29
ENSSSCG00000003708
ENSG00000154065
Ankyrin repeat domain 29
Low tissue specificity
Detected in all
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