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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16617 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM169A
ENSSSCG00000014076
ENSG00000198780
Family with sequence similarity 169 member A
Tissue enhanced
Detected in many
cornea:
32.5
lens:
32.1
pineal gland:
28.7
pituitary gland:
27.6
retina:
49.7
FAM171A1
ENSSSCG00000011047
ENSG00000148468
Family with sequence similarity 171 member A1
Low tissue specificity
Detected in all
FAM171A2
ENSSSCG00000017356
ENSG00000161682
Family with sequence similarity 171 member A2
Tissue enhanced
Detected in many
kidney:
29.7
male glands:
22.8
FAM171B
ENSSSCG00000025134
ENSG00000144369
Family with sequence similarity 171 member B
Tissue enhanced
Detected in many
brain:
49.7
pineal gland:
50.1
FAM172A
ENSSSCG00000027608
ENSG00000113391
Family with sequence similarity 172 member A
Low tissue specificity
Detected in all
FAM173A
ENSSSCG00000008004
ENSG00000103254
Family with sequence similarity 173 member A
Low tissue specificity
Detected in all
FAM173B
ENSSSCG00000036387
ENSG00000150756
Family with sequence similarity 173 member B
Low tissue specificity
Detected in all
FAM174A
ENSSSCG00000014179
ENSG00000174132
Family with sequence similarity 174 member A
Low tissue specificity
Detected in all
FAM174B
ENSSSCG00000002265
ENSG00000185442
Family with sequence similarity 174 member B
Tissue enhanced
Detected in many
male glands:
122.3
FAM177A1
ENSSSCG00000034753
ENSG00000151327
Protein FAM177A1
Low tissue specificity
Detected in all
FAM178B
ENSSSCG00000008196
ENSG00000168754
Family with sequence similarity 178 member B
Tissue enhanced
Detected in many
testis:
20.6
vagus nerve:
11.5
FAM180A
ENSSSCG00000036403
ENSG00000189320
Family with sequence similarity 180 member A
Tissue enhanced
Detected in many
cartilage:
24.4
dura mater:
28.3
FAM181A
ENSSSCG00000040253
ENSG00000140067
Family with sequence similarity 181 member A
Group enriched
Detected in some
brain:
19.1
testis:
54.1
FAM184A
ENSSSCG00000004245
ENSG00000111879
Family with sequence similarity 184 member A
Tissue enhanced
Detected in many
brain:
25.4
choroid plexus:
25.7
testis:
17.6
FAM184B
ENSSSCG00000026232
ENSG00000047662
Family with sequence similarity 184 member B
Tissue enhanced
Detected in many
epididymis:
37.2
esophagus:
17.9
FAM185A
ENSSSCG00000015414
ENSG00000222011
Family with sequence similarity 185 member A
Low tissue specificity
Detected in all
FAM186B
ENSSSCG00000000205
ENSG00000135436
Family with sequence similarity 186 member B
Group enriched
Detected in all
epididymis:
9.8
testis:
35.7
FAM189A2
ENSSSCG00000005249
ENSG00000135063
Family with sequence similarity 189 member A2
Tissue enriched
Detected in many
thyroid gland:
101.3
FAM189B
ENSSSCG00000006521
ENSG00000160767
Family with sequence similarity 189 member B
Low tissue specificity
Detected in all
FAM192A
ENSSSCG00000034414
ENSG00000172775
Family with sequence similarity 192 member A
Low tissue specificity
Detected in all
FAM193A
ENSSSCG00000029745
ENSG00000125386
Family with sequence similarity 193 member A
Low tissue specificity
Detected in all
FAM193B
ENSSSCG00000014038
ENSG00000146067
Protein FAM193B
Low tissue specificity
Detected in all
FAM196B
ENSSSCG00000017010
ENSG00000204767
Family with sequence similarity 196 member B
Tissue enhanced
Detected in many
lymphoid tissue:
22.6
FAM198A
ENSSSCG00000011294
ENSG00000144649
Family with sequence similarity 198 member A
Tissue enhanced
Detected in many
dura mater:
40.3
FAM198B
ENSSSCG00000008873
ENSG00000164125
Family with sequence similarity 198 member B
Low tissue specificity
Detected in all
FAM199X
ENSSSCG00000012542
ENSG00000123575
Family with sequence similarity 199, X-linked
Low tissue specificity
Detected in all
FAM19A5
ENSSSCG00000034776
ENSG00000219438
Family with sequence similarity 19 member A5, C-C motif chemokine like
Tissue enhanced
Detected in many
brain:
21.9
epididymis:
13.5
vagus nerve:
10.6
FAM200A
ENSSSCG00000029175
ENSG00000221909
Family with sequence similarity 200 member A
Low tissue specificity
Detected in all
FAM207A
ENSSSCG00000028571
ENSG00000160256
Family with sequence similarity 207 member A
Low tissue specificity
Detected in all
FAM208A
ENSSSCG00000024201
ENSG00000163946
Family with sequence similarity 208 member A
Low tissue specificity
Detected in all
FAM209B
ENSSSCG00000007498
ENSG00000124103,ENSG00000213714
Protein FAM209B precursor
Tissue enriched
Detected in some
testis:
83.5
FAM20A
ENSSSCG00000017258
ENSG00000108950
FAM20A, golgi associated secretory pathway pseudokinase
Tissue enhanced
Detected in many
cartilage:
63.8
liver:
25.9
FAM20B
ENSSSCG00000015524
ENSG00000116199
FAM20B, glycosaminoglycan xylosylkinase
Low tissue specificity
Detected in all
FAM20C
ENSSSCG00000020813
ENSG00000177706
FAM20C, golgi associated secretory pathway kinase
Tissue enhanced
Detected in all
cartilage:
47.3
FAM210A
ENSSSCG00000030438
ENSG00000177150
Family with sequence similarity 210 member A
Low tissue specificity
Detected in all
FAM210B
ENSSSCG00000007492
ENSG00000124098
Protein FAM210B
Low tissue specificity
Detected in all
FAM212A
ENSSSCG00000033410
ENSG00000185614
Family with sequence similarity 212 member A
Low tissue specificity
Detected in all
FAM213A
ENSSSCG00000010340
ENSG00000122378
Redox-regulatory protein FAM213A isoform 2
Low tissue specificity
Detected in all
FAM213B
ENSSSCG00000026554
ENSG00000157870
Prostamide/prostaglandin F synthase
Tissue enhanced
Detected in many
brain:
21.2
lens:
53.5
FAM214A
ENSSSCG00000004617
ENSG00000047346
Family with sequence similarity 214 member A
Low tissue specificity
Detected in all
FAM214B
ENSSSCG00000005301
ENSG00000005238
Family with sequence similarity 214 member B
Low tissue specificity
Detected in all
FAM216A
ENSSSCG00000009822
ENSG00000204856
Protein FAM216A
Low tissue specificity
Detected in all
FAM216B
ENSSSCG00000009428
ENSG00000179813
Protein FAM216B
Tissue enhanced
Detected in all
fallopian tube:
53.2
FAM217B
ENSSSCG00000007531
ENSG00000196227
Family with sequence similarity 217 member B
Low tissue specificity
Detected in all
FAM219A
ENSSSCG00000035455
ENSG00000164970
Family with sequence similarity 219 member A
Tissue enhanced
Detected in all
brain:
31.0
FAM219B
ENSSSCG00000029776
ENSG00000178761
Protein FAM219B
Low tissue specificity
Detected in all
FAM221B
ENSSSCG00000005324
ENSG00000204930
Family with sequence similarity 221 member B
Tissue enriched
Detected in many
testis:
43.6
FAM222A
ENSSSCG00000009927
ENSG00000139438
Family with sequence similarity 222 member A
Tissue enhanced
Detected in many
adrenal gland:
39.2
lens:
42.6
retina:
24.7
FAM222B
ENSSSCG00000039321
ENSG00000173065
Family with sequence similarity 222 member B
Low tissue specificity
Detected in all
FAM227B
ENSSSCG00000004648
ENSG00000166262
Family with sequence similarity 227 member B
Tissue enriched
Detected in many
testis:
38.7
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