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Keyword
Chromosome
1
2
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7
8
9
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16104 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACBD6
ENSSSCG00000015534
ENSG00000230124
Acyl-CoA binding domain containing 6
Low tissue specificity
Detected in all
ACBD7
ENSSSCG00000038184
ENSG00000176244
Acyl-CoA binding domain containing 7
Tissue enhanced
Detected in many
brain:
14.0
retina:
23.0
ACCS
ENSSSCG00000013282
ENSG00000110455
1-aminocyclopropane-1-carboxylate synthase homolog (inactive)
Low tissue specificity
Detected in all
ACCSL
ENSSSCG00000013283
ENSG00000205126
1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like
Tissue enhanced
Detected in all
epididymis:
26.1
ACD
ENSSSCG00000029590
ENSG00000102977
ACD, shelterin complex subunit and telomerase recruitment factor
Low tissue specificity
Detected in all
ACE
ENSSSCG00000017296
ENSG00000159640
Angiotensin-converting enzyme isoform 1 precursor
Tissue enhanced
Detected in many
testis:
102.1
ACER1
ENSSSCG00000023969
ENSG00000167769
Alkaline ceramidase 1
Low tissue specificity
Detected in all
ACER2
ENSSSCG00000034213
ENSG00000177076
Alkaline ceramidase 2
Tissue enhanced
Detected in many
adipose tissue:
35.7
male glands:
43.4
ACIN1
ENSSSCG00000002034
ENSG00000100813
Apoptotic chromatin condensation inducer 1
Low tissue specificity
Detected in all
ACKR1
ENSSSCG00000036223
ENSG00000213088
Atypical chemokine receptor 1
Tissue enhanced
Detected in many
cartilage:
39.6
mesothelial tissue:
62.6
ACKR2
ENSSSCG00000031154
ENSG00000144648
Atypical chemokine receptor 2
Tissue enhanced
Detected in many
mesothelial tissue:
23.7
synovial tissue:
69.1
ACKR3
ENSSSCG00000016322
ENSG00000144476
Atypical chemokine receptor 3
Tissue enhanced
Detected in all
cartilage:
106.7
ACKR4
ENSSSCG00000011630
ENSG00000129048
Atypical chemokine receptor 4
Tissue enhanced
Detected in many
adipose tissue:
28.7
ovary:
33.6
ACLY
ENSSSCG00000017421
ENSG00000131473
ATP-citrate synthase isoform 2
Tissue enhanced
Detected in all
aorta:
90.5
pineal gland:
90.2
ACO1
ENSSSCG00000023807
ENSG00000122729
Aconitase 1
Tissue enhanced
Detected in all
adipose tissue:
59.8
ACO2
ENSSSCG00000000064
ENSG00000100412
Aconitate hydratase, mitochondrial precursor
Tissue enhanced
Detected in all
heart:
137.6
skeletal muscle:
155.2
ACOD1
ENSSSCG00000009469
ENSG00000102794
Aconitate decarboxylase 1
Tissue enhanced
Detected in all
lymphoid tissue:
19.0
ACOT11
ENSSSCG00000037559
ENSG00000162390
Acyl-CoA thioesterase 11
Low tissue specificity
Detected in many
ACOT13
ENSSSCG00000036411
ENSG00000112304
Acyl-coenzyme A thioesterase 13
Tissue enhanced
Detected in all
heart:
50.5
liver:
84.2
ACOT4
ENSSSCG00000002349
ENSG00000177465
Acyl-CoA thioesterase 4
Low tissue specificity
Detected in all
ACOT7
ENSSSCG00000003377
ENSG00000097021
Acyl-CoA thioesterase 7
Tissue enhanced
Detected in many
brain:
39.2
testis:
31.3
ACOT8
ENSSSCG00000007426
ENSG00000101473
Acyl-CoA thioesterase 8
Low tissue specificity
Detected in all
ACOT9
ENSSSCG00000012172
ENSG00000123130
Acyl-CoA thioesterase 9
Low tissue specificity
Detected in all
ACOX1
ENSSSCG00000017198
ENSG00000161533
Peroxisomal acyl-coenzyme A oxidase 1
Tissue enhanced
Detected in all
liver:
108.5
ACOX2
ENSSSCG00000011477
ENSG00000168306
Acyl-CoA oxidase 2
Group enriched
Detected in all
choroid plexus:
37.1
kidney:
39.7
liver:
99.8
ACOX3
ENSSSCG00000008724
ENSG00000087008
Acyl-CoA oxidase 3, pristanoyl
Low tissue specificity
Detected in all
ACP1
ENSSSCG00000008659
ENSG00000143727
Low molecular weight phosphotyrosine protein phosphatase
Low tissue specificity
Detected in all
ACP2
ENSSSCG00000013242
ENSG00000134575
Lysosomal acid phosphatase precursor
Low tissue specificity
Detected in all
ACP4
ENSSSCG00000024736
ENSG00000142513
Acid phosphatase 4
Tissue enhanced
Detected in all
lens:
40.4
testis:
36.4
ACP5
ENSSSCG00000032282
ENSG00000102575
Tartrate-resistant acid phosphatase type 5
Tissue enhanced
Detected in all
bone marrow:
45.5
dura mater:
103.0
ACP6
ENSSSCG00000006697
ENSG00000162836
Acid phosphatase 6, lysophosphatidic
Low tissue specificity
Detected in all
ACRBP
ENSSSCG00000000700
ENSG00000111644
Acrosin binding protein
Tissue enriched
Detected in all
testis:
107.8
ACSF2
ENSSSCG00000017566
ENSG00000167107
Acyl-CoA synthetase family member 2
Tissue enhanced
Detected in all
testis:
110.3
ACSF3
ENSSSCG00000023866
ENSG00000176715
Acyl-CoA synthetase family member 3
Low tissue specificity
Detected in all
ACSL1
ENSSSCG00000015784
ENSG00000151726
Long-chain-fatty-acid--CoA ligase 1
Tissue enhanced
Detected in all
liver:
113.3
skeletal muscle:
63.6
ACSL3
ENSSSCG00000016223
ENSG00000123983
Long-chain-fatty-acid--CoA ligase 3
Tissue enriched
Detected in all
male glands:
126.7
ACSL4
ENSSSCG00000012583
ENSG00000068366
Long-chain-fatty-acid--CoA ligase 4
Tissue enriched
Detected in all
ovary:
135.8
ACSL5
ENSSSCG00000031789
ENSG00000197142
Long-chain-fatty-acid--CoA ligase 5
Low tissue specificity
Detected in many
ACSM3
ENSSSCG00000007857
ENSG00000005187
Acyl-CoA synthetase medium chain family member 3
Tissue enhanced
Detected in many
fallopian tube:
50.3
liver:
26.6
ACSM5
ENSSSCG00000026453
ENSG00000183549
Acyl-CoA synthetase medium chain family member 5
Low tissue specificity
Detected in all
ACSS1
ENSSSCG00000007133
ENSG00000154930
Acyl-CoA synthetase short chain family member 1
Low tissue specificity
Detected in many
ACSS2
ENSSSCG00000007286
ENSG00000131069
Acetyl-coenzyme A synthetase, cytoplasmic
Low tissue specificity
Detected in all
ACSS3
ENSSSCG00000000939
ENSG00000111058
Acyl-CoA synthetase short chain family member 3
Low tissue specificity
Detected in all
ACTA2
ENSSSCG00000010447
ENSG00000107796
Actin, aortic smooth muscle
Tissue enhanced
Detected in many
ductus deferens:
294.9
endometrium:
265.1
penis:
206.0
ACTB
ENSSSCG00000007585
ENSG00000075624
Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed
Low tissue specificity
Detected in all
ACTG1
ENSSSCG00000028355
ENSG00000184009
Actin gamma 1
Low tissue specificity
Detected in all
ACTG2
ENSSSCG00000008294
ENSG00000163017
Actin, gamma 2, smooth muscle, enteric
Tissue enriched
Detected in many
smooth muscle:
747.6
ACTL6A
ENSSSCG00000011762
ENSG00000136518
Actin like 6A
Low tissue specificity
Detected in all
ACTN1
ENSSSCG00000036702
ENSG00000072110
Alpha-actinin-1
Tissue enhanced
Detected in all
smooth muscle:
150.4
ACTN4
ENSSSCG00000002965
ENSG00000130402
Actinin alpha 4
Low tissue specificity
Detected in all
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