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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16104 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ATF3
ENSSSCG00000015595
ENSG00000162772
Activating transcription factor 3
Tissue enhanced
Detected in many
aorta:
93.6
ductus deferens:
75.9
ATF4
ENSSSCG00000000084
ENSG00000128272
Cyclic AMP-dependent transcription factor ATF-4
Tissue enhanced
Detected in all
skeletal muscle:
180.7
ATF5
ENSSSCG00000003201
ENSG00000169136
Activating transcription factor 5
Tissue enhanced
Detected in all
lens:
54.3
liver:
130.9
salivary gland:
58.8
ATF6
ENSSSCG00000006346
ENSG00000118217
Activating transcription factor 6
Low tissue specificity
Detected in all
ATF6B
ENSSSCG00000001430
ENSG00000213676
Cyclic AMP-dependent transcription factor ATF-6 beta
Low tissue specificity
Detected in all
ATF7IP
ENSSSCG00000000612
ENSG00000171681
Activating transcription factor 7 interacting protein
Low tissue specificity
Detected in all
ATF7IP2
ENSSSCG00000020675
ENSG00000166669
Activating transcription factor 7 interacting protein 2
Tissue enhanced
Detected in many
retina:
18.2
testis:
43.5
ATG10
ENSSSCG00000025210
ENSG00000152348
Autophagy related 10
Low tissue specificity
Detected in all
ATG101
ENSSSCG00000033687
ENSG00000123395
Autophagy related 101
Low tissue specificity
Detected in all
ATG12
ENSSSCG00000033912
ENSG00000145782
Ubiquitin-like protein ATG12
Low tissue specificity
Detected in all
ATG13
ENSSSCG00000013257
ENSG00000175224
Autophagy related 13
Low tissue specificity
Detected in all
ATG14
ENSSSCG00000005058
ENSG00000126775
Autophagy related 14
Low tissue specificity
Detected in all
ATG16L1
ENSSSCG00000016300
ENSG00000085978
Autophagy-related protein 16-1 isoform 1
Low tissue specificity
Detected in all
ATG16L2
ENSSSCG00000014819
ENSG00000168010
Autophagy related 16 like 2
Tissue enhanced
Detected in all
cartilage:
41.2
ATG2A
ENSSSCG00000023890
ENSG00000110046
Autophagy-related protein 2 homolog A
Low tissue specificity
Detected in all
ATG2B
ENSSSCG00000002502
ENSG00000066739
Autophagy-related protein 2 homolog B
Tissue enhanced
Detected in all
choroid plexus:
73.8
ATG3
ENSSSCG00000011930
ENSG00000144848
Autophagy related 3
Low tissue specificity
Detected in all
ATG4A
ENSSSCG00000012569
ENSG00000101844
Autophagy related 4A cysteine peptidase
Tissue enhanced
Detected in all
male glands:
36.5
ATG4B
ENSSSCG00000032919
ENSG00000168397
Cysteine protease ATG4B
Low tissue specificity
Detected in all
ATG4C
ENSSSCG00000003816
ENSG00000125703
Cysteine protease ATG4C
Tissue enhanced
Detected in all
brain:
42.7
ATG4D
ENSSSCG00000013645
ENSG00000130734
Cysteine protease ATG4D
Low tissue specificity
Detected in all
ATG5
ENSSSCG00000004370
ENSG00000057663
Autophagy related 5
Low tissue specificity
Detected in all
ATG7
ENSSSCG00000011575
ENSG00000197548
Ubiquitin-like modifier-activating enzyme ATG7
Low tissue specificity
Detected in all
ATIC
ENSSSCG00000016173
ENSG00000138363
Bifunctional purine biosynthesis protein PURH
Low tissue specificity
Detected in all
ATL2
ENSSSCG00000008487
ENSG00000119787
Atlastin GTPase 2
Low tissue specificity
Detected in all
ATL3
ENSSSCG00000013054
ENSG00000184743
Atlastin GTPase 3
Low tissue specificity
Detected in all
ATM
ENSSSCG00000025606
ENSG00000149311
Serine-protein kinase ATM
Low tissue specificity
Detected in all
ATN1
ENSSSCG00000025117
ENSG00000111676
Atrophin 1
Low tissue specificity
Detected in all
ATOH8
ENSSSCG00000008230
ENSG00000168874
Atonal bHLH transcription factor 8
Tissue enhanced
Detected in many
thyroid gland:
38.9
ATOX1
ENSSSCG00000026414
Copper transport protein ATOX1
Tissue enhanced
Detected in all
male glands:
134.0
ATP10B
ENSSSCG00000021527
ENSG00000118322
ATPase phospholipid transporting 10B (putative)
Tissue enhanced
Detected in many
large intestine:
50.3
small intestine:
25.6
stomach:
21.1
ATP11A
ENSSSCG00000037561
ENSG00000068650
ATPase phospholipid transporting 11A
Low tissue specificity
Detected in all
ATP11C
ENSSSCG00000012713
ENSG00000101974
ATPase phospholipid transporting 11C
Low tissue specificity
Detected in all
ATP12A
ENSSSCG00000022638
ENSG00000075673
ATPase H+/K+ transporting non-gastric alpha2 subunit
Tissue enhanced
Detected in all
upper respiratory system:
30.7
ATP13A1
ENSSSCG00000013930
ENSG00000105726
ATPase 13A1
Low tissue specificity
Detected in all
ATP13A2
ENSSSCG00000031082
ENSG00000159363
ATPase 13A2
Low tissue specificity
Detected in all
ATP13A3
ENSSSCG00000011825
ENSG00000133657
ATPase 13A3
Tissue enhanced
Detected in all
vagus nerve:
71.2
ATP13A5
ENSSSCG00000026260
ENSG00000187527
ATPase 13A5
Tissue enhanced
Detected in some
breast:
17.3
esophagus:
14.2
salivary gland:
32.5
upper respiratory system:
24.4
ATP1A1
ENSSSCG00000006740
ENSG00000163399
Sodium/potassium-transporting ATPase subunit alpha-1 precursor
Tissue enhanced
Detected in all
kidney:
127.3
male glands:
141.9
ATP1A2
ENSSSCG00000006391
ENSG00000018625
Sodium/potassium-transporting ATPase subunit alpha-2
Tissue enhanced
Detected in all
brain:
103.3
choroid plexus:
63.2
skeletal muscle:
61.8
ATP1B1
ENSSSCG00000006296
ENSG00000143153
Sodium/potassium-transporting ATPase subunit beta-1
Tissue enhanced
Detected in all
kidney:
110.2
male glands:
224.2
ATP23
ENSSSCG00000000453
ENSG00000166896
ATP23 metallopeptidase and ATP synthase assembly factor homolog
Low tissue specificity
Detected in all
ATP2A2
ENSSSCG00000034386
ENSG00000174437
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
Tissue enhanced
Detected in all
heart:
125.0
skeletal muscle:
197.8
ATP2A3
ENSSSCG00000017874
ENSG00000074370
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3
Tissue enhanced
Detected in many
salivary gland:
69.7
stomach:
96.5
upper respiratory system:
48.2
ATP2B1
ENSSSCG00000027898
ENSG00000070961
Plasma membrane calcium-transporting ATPase 1
Low tissue specificity
Detected in all
ATP2B4
ENSSSCG00000015273
ENSG00000058668
ATPase plasma membrane Ca2+ transporting 4
Tissue enhanced
Detected in many
smooth muscle:
91.2
ATP2C1
ENSSSCG00000011183
ENSG00000017260
ATPase secretory pathway Ca2+ transporting 1
Low tissue specificity
Detected in all
ATP2C2
ENSSSCG00000002671
ENSG00000064270
ATPase secretory pathway Ca2+ transporting 2
Group enriched
Detected in many
esophagus:
42.4
male glands:
129.8
ATP5F1A
ENSSSCG00000004499
ENSG00000152234
ATP synthase subunit alpha, mitochondrial
Tissue enhanced
Detected in all
heart:
121.2
skeletal muscle:
114.5
ATP5F1C
ENSSSCG00000034086
ENSG00000165629
ATP synthase F1 subunit gamma
Low tissue specificity
Detected in all
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