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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14921 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GATA1
ENSSSCG00000027237
ENSG00000102145
Erythroid transcription factor
Low tissue specificity
Detected in many
GATA4
ENSSSCG00000022383
ENSG00000136574
Transcription factor GATA-4
Tissue enhanced
Detected in some
heart:
36.1
small intestine:
21.6
stomach:
67.0
GATA6
ENSSSCG00000003702
ENSG00000141448
Transcription factor GATA-6
Tissue enhanced
Detected in many
adrenal gland:
48.9
heart:
39.4
ovary:
36.9
stomach:
41.6
GATAD1
ENSSSCG00000031835
ENSG00000157259
GATA zinc finger domain containing 1
Low tissue specificity
Detected in all
GATAD2A
ENSSSCG00000013938
ENSG00000167491
GATA zinc finger domain containing 2A
Low tissue specificity
Detected in all
GATAD2B
ENSSSCG00000006562
ENSG00000143614
GATA zinc finger domain containing 2B
Low tissue specificity
Detected in all
GATB
ENSSSCG00000009015
ENSG00000059691
Glutamyl-tRNA amidotransferase subunit B
Low tissue specificity
Detected in all
GATD1
ENSSSCG00000012846
ENSG00000177225
Glutamine amidotransferase like class 1 domain containing 1
Low tissue specificity
Detected in all
GATM
ENSSSCG00000004672
ENSG00000171766
Glycine amidinotransferase, mitochondrial
Tissue enhanced
Detected in all
kidney:
41.3
liver:
75.6
male glands:
39.5
GBA
ENSSSCG00000006522
ENSG00000177628
Glucosylceramidase precursor
Low tissue specificity
Detected in all
GBA2
ENSSSCG00000005319
ENSG00000070610
Non-lysosomal glucosylceramidase
Low tissue specificity
Detected in all
GBA3
ENSSSCG00000008754
Glucosylceramidase beta 3 (gene/pseudogene)
Tissue enhanced
Detected in many
kidney:
24.2
liver:
13.8
small intestine:
24.3
GBE1
ENSSSCG00000012000
ENSG00000114480
1,4-alpha-glucan branching enzyme 1
Tissue enhanced
Detected in all
cartilage:
61.9
GBF1
ENSSSCG00000010579
ENSG00000107862
Golgi brefeldin A resistant guanine nucleotide exchange factor 1
Low tissue specificity
Detected in all
GBP2
ENSSSCG00000006923
ENSG00000162645
Interferon-induced guanylate-binding protein 2
Tissue enhanced
Detected in all
small intestine:
38.8
stomach:
38.0
GBX1
ENSSSCG00000032249
ENSG00000164900
Gastrulation brain homeobox 1
Tissue enhanced
Detected in many
mesothelial tissue:
9.6
GC
ENSSSCG00000027609
ENSG00000145321
GC, vitamin D binding protein
Tissue enriched
Detected in some
liver:
361.7
GCA
ENSSSCG00000027472
ENSG00000115271
Grancalcin
Tissue enhanced
Detected in many
brain:
37.0
GCAT
ENSSSCG00000029945
ENSG00000100116
Glycine C-acetyltransferase
Tissue enriched
Detected in many
liver:
49.9
GCC1
ENSSSCG00000035211
ENSG00000179562
GRIP and coiled-coil domain containing 1
Low tissue specificity
Detected in all
GCC2
ENSSSCG00000008138
ENSG00000135968
GRIP and coiled-coil domain containing 2
Low tissue specificity
Detected in all
GCDH
ENSSSCG00000013729
ENSG00000105607
Glutaryl-CoA dehydrogenase
Low tissue specificity
Detected in all
GCFC2
ENSSSCG00000021287
ENSG00000005436
GC-rich sequence DNA-binding factor 2
Low tissue specificity
Detected in all
GCGR
ENSSSCG00000034891
ENSG00000215644
Glucagon receptor
Tissue enriched
Detected in some
liver:
135.9
GCH1
ENSSSCG00000035715
ENSG00000131979
GTP cyclohydrolase 1
Tissue enhanced
Detected in all
ovary:
25.6
pineal gland:
29.0
GCHFR
ENSSSCG00000032022
ENSG00000188277
GTP cyclohydrolase 1 feedback regulatory protein
Low tissue specificity
Detected in all
GCK
ENSSSCG00000016751
ENSG00000106633
Myosin regulatory light chain 2, atrial isoform
Tissue enriched
Detected in some
heart:
414.0
GCKR
ENSSSCG00000028672
ENSG00000084734
Glucokinase regulator
Tissue enhanced
Detected in all
liver:
49.1
GCLC
ENSSSCG00000001488
ENSG00000001084
Glutamate-cysteine ligase catalytic subunit
Tissue enhanced
Detected in all
lens:
59.0
GCLM
ENSSSCG00000037549
ENSG00000023909
Glutamate-cysteine ligase modifier subunit
Tissue enhanced
Detected in all
lens:
63.3
GCM1
ENSSSCG00000032538
ENSG00000137270
Glial cells missing homolog 1
Low tissue specificity
Detected in all
GCM2
ENSSSCG00000035562
ENSG00000124827
Glial cells missing homolog 2
Low tissue specificity
Detected in many
GCN1
ENSSSCG00000009898
ENSG00000089154
GCN1, eIF2 alpha kinase activator homolog
Low tissue specificity
Detected in all
GCNT1
ENSSSCG00000005277
ENSG00000187210
Glucosaminyl (N-acetyl) transferase 1, core 2
Tissue enhanced
Detected in many
male glands:
50.9
GCNT2
ENSSSCG00000033009
ENSG00000111846
Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
Low tissue specificity
Detected in all
GCNT4
ENSSSCG00000029710
ENSG00000176928
Glucosaminyl (N-acetyl) transferase 4, core 2
Tissue enhanced
Detected in all
lymphoid tissue:
20.5
thyroid gland:
30.9
GCNT7
ENSSSCG00000007497
ENSG00000124091
Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7
Low tissue specificity
Detected in all
GDAP1
ENSSSCG00000006173
ENSG00000104381
Ganglioside induced differentiation associated protein 1
Group enriched
Detected in all
brain:
21.9
pineal gland:
11.4
pituitary gland:
10.8
retina:
10.4
GDAP1L1
ENSSSCG00000007373
ENSG00000124194
Ganglioside induced differentiation associated protein 1 like 1
Tissue enhanced
Detected in all
brain:
24.6
GDAP2
ENSSSCG00000006728
ENSG00000196505
Ganglioside induced differentiation associated protein 2
Low tissue specificity
Detected in all
GDE1
ENSSSCG00000029212
ENSG00000006007
Glycerophosphodiester phosphodiesterase 1
Low tissue specificity
Detected in all
GDF15
ENSSSCG00000034260
ENSG00000130513
Growth/differentiation factor 15 precursor
Low tissue specificity
Detected in all
GDF2
ENSSSCG00000010375
ENSG00000263761
Growth differentiation factor 2
Tissue enriched
Detected in some
liver:
16.7
GDF9
ENSSSCG00000014288
ENSG00000164404
Growth/differentiation factor 9 precursor
Low tissue specificity
Detected in all
GDI1
ENSSSCG00000030421
ENSG00000203879
GDP dissociation inhibitor 1
Tissue enhanced
Detected in all
brain:
82.0
GDI2
ENSSSCG00000011137
ENSG00000057608
Rab GDP dissociation inhibitor beta
Low tissue specificity
Detected in all
GDNF
ENSSSCG00000038727
ENSG00000168621
Glial cell derived neurotrophic factor
Tissue enhanced
Detected in many
liver:
10.8
penis:
9.8
skeletal muscle:
13.1
smooth muscle:
12.4
GDPD2
ENSSSCG00000012376
ENSG00000130055
Glycerophosphodiester phosphodiesterase domain containing 2
Tissue enhanced
Detected in many
choroid plexus:
25.2
skin:
29.3
GDPD3
ENSSSCG00000021811
ENSG00000102886
Glycerophosphodiester phosphodiesterase domain containing 3
Tissue enhanced
Detected in many
lens:
31.0
GDPD5
ENSSSCG00000014853
ENSG00000158555
Glycerophosphodiester phosphodiesterase domain containing 5
Low tissue specificity
Detected in all
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