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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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14921 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FKBP5
ENSSSCG00000001549
ENSG00000096060
Peptidyl-prolyl cis-trans isomerase FKBP5
Low tissue specificity
Detected in all
FKBP7
ENSSSCG00000015999
ENSG00000079150
FK506 binding protein 7
Tissue enhanced
Detected in all
cartilage:
51.2
FKBP8
ENSSSCG00000013905
ENSG00000105701
FK506 binding protein 8
Low tissue specificity
Detected in all
FKBP9
ENSSSCG00000021250
ENSG00000122642
Peptidyl-prolyl cis-trans isomerase FKBP9 precursor
Low tissue specificity
Detected in all
FKRP
ENSSSCG00000003103
ENSG00000181027
Fukutin related protein
Low tissue specificity
Detected in all
FKTN
ENSSSCG00000005427
ENSG00000106692
Fukutin
Low tissue specificity
Detected in all
FLI1
ENSSSCG00000015237
ENSG00000151702
Fli-1 proto-oncogene, ETS transcription factor
Low tissue specificity
Detected in many
FLII
ENSSSCG00000039324
ENSG00000177731
FLII, actin remodeling protein
Low tissue specificity
Detected in all
FLNB
ENSSSCG00000011471
ENSG00000136068
Filamin B
Low tissue specificity
Detected in all
FLOT1
ENSSSCG00000022725
ENSG00000137312
Flotillin-1
Low tissue specificity
Detected in all
FLOT2
ENSSSCG00000017777
ENSG00000132589
Flotillin 2
Low tissue specificity
Detected in all
FLRT1
ENSSSCG00000013044
ENSG00000126500
Fibronectin leucine rich transmembrane protein 1
Tissue enhanced
Detected in many
brain:
12.6
kidney:
18.7
lymphoid tissue:
15.7
thyroid gland:
15.4
FLRT2
ENSSSCG00000040166
ENSG00000185070
Fibronectin leucine rich transmembrane protein 2
Tissue enhanced
Detected in all
lens:
42.3
FLRT3
ENSSSCG00000007079
ENSG00000125848
Fibronectin leucine rich transmembrane protein 3
Tissue enhanced
Detected in many
skin:
24.8
FLT1
ENSSSCG00000009320
ENSG00000102755
Fms related tyrosine kinase 1
Low tissue specificity
Detected in many
FLT3
ENSSSCG00000009314
ENSG00000122025
Fms related tyrosine kinase 3
Tissue enhanced
Detected in many
brain:
12.1
large intestine:
8.3
FLT3LG
ENSSSCG00000003167
ENSG00000090554
Fms related tyrosine kinase 3 ligand
Low tissue specificity
Detected in all
FLT4
ENSSSCG00000014007
ENSG00000037280
Fms related tyrosine kinase 4
Low tissue specificity
Detected in many
FLVCR1
ENSSSCG00000015590
ENSG00000162769
Feline leukemia virus subgroup C receptor-related protein 1
Low tissue specificity
Detected in all
FLVCR2
ENSSSCG00000021606
ENSG00000119686
Feline leukemia virus subgroup C receptor-related protein 2
Tissue enhanced
Detected in many
liver:
25.8
lung:
43.1
FMC1
ENSSSCG00000038700
ENSG00000164898
Formation of mitochondrial complex V assembly factor 1 homolog
Low tissue specificity
Detected in all
FMNL1
ENSSSCG00000017333
ENSG00000184922
Formin like 1
Tissue enhanced
Detected in many
lymphoid tissue:
52.2
FMNL2
ENSSSCG00000015866
ENSG00000157827
Formin like 2
Tissue enhanced
Detected in all
brain:
86.4
FMNL3
ENSSSCG00000025114
ENSG00000161791
Formin like 3
Low tissue specificity
Detected in all
FMO1
ENSSSCG00000015268
ENSG00000010932
Dimethylaniline monooxygenase [N-oxide-forming] 1
Tissue enriched
Detected in many
liver:
195.8
FMO3
ENSSSCG00000023472
ENSG00000007933
Flavin containing monooxygenase 3
Tissue enhanced
Detected in many
liver:
20.8
upper respiratory system:
18.2
FMO4
ENSSSCG00000015266
ENSG00000076258
Flavin containing monooxygenase 4
Low tissue specificity
Detected in many
FMO5
ENSSSCG00000006702
ENSG00000131781
Flavin containing monooxygenase 5
Tissue enhanced
Detected in all
breast:
31.0
liver:
67.0
lung:
32.1
FMR1
ENSSSCG00000012727
ENSG00000102081
Fragile X mental retardation 1
Low tissue specificity
Detected in all
FN1
ENSSSCG00000016174
ENSG00000115414
Fibronectin 1
Tissue enhanced
Detected in many
adipose tissue:
168.3
male glands:
433.9
synovial tissue:
420.5
FN3K
ENSSSCG00000017131
ENSG00000167363
Fructosamine 3 kinase
Tissue enhanced
Detected in many
lens:
51.3
FN3KRP
ENSSSCG00000017134
ENSG00000141560
Fructosamine 3 kinase related protein
Low tissue specificity
Detected in all
FNBP1
ENSSSCG00000005689
ENSG00000187239
Formin binding protein 1
Low tissue specificity
Detected in all
FNBP1L
ENSSSCG00000006894
ENSG00000137942
Formin binding protein 1 like
Low tissue specificity
Detected in all
FNBP4
ENSSSCG00000030610
ENSG00000109920
Formin binding protein 4
Low tissue specificity
Detected in all
FNDC1
ENSSSCG00000004052
ENSG00000164694
Fibronectin type III domain containing 1
Tissue enhanced
Detected in many
dura mater:
58.1
mesothelial tissue:
57.0
synovial tissue:
45.8
FNDC3A
ENSSSCG00000022159
ENSG00000102531
Fibronectin type III domain containing 3A
Low tissue specificity
Detected in all
FNDC3B
ENSSSCG00000011752
ENSG00000075420
Fibronectin type III domain containing 3B
Low tissue specificity
Detected in all
FNDC4
ENSSSCG00000029305
ENSG00000115226
Fibronectin type III domain containing 4
Tissue enhanced
Detected in many
brain:
35.6
FNDC5
ENSSSCG00000025834
ENSG00000160097
Fibronectin type III domain containing 5
Tissue enhanced
Detected in some
brain:
43.5
choroid plexus:
28.5
retina:
14.5
FNIP1
ENSSSCG00000014269
ENSG00000217128
Folliculin interacting protein 1
Low tissue specificity
Detected in all
FNIP2
ENSSSCG00000031175
ENSG00000052795
Folliculin interacting protein 2
Low tissue specificity
Detected in all
FNTA
ENSSSCG00000037221
ENSG00000168522
Farnesyltransferase, CAAX box, alpha
Tissue enhanced
Detected in all
brain:
57.4
FOCAD
ENSSSCG00000028406
ENSG00000188352
Focadhesin
Tissue enhanced
Detected in all
choroid plexus:
66.6
FOLR1
ENSSSCG00000022236
ENSG00000110195
Folate receptor alpha precursor
Tissue enhanced
Detected in all
choroid plexus:
123.7
synovial tissue:
158.6
FOLR2
ENSSSCG00000014812
ENSG00000165457
Folate receptor 2 precursor
Tissue enhanced
Detected in many
cartilage:
59.1
liver:
94.8
FOPNL
ENSSSCG00000033377
ENSG00000133393
FGFR1OP N-terminal like
Low tissue specificity
Detected in all
FOS
ENSSSCG00000002383
ENSG00000170345
Proto-oncogene c-Fos
Tissue enhanced
Detected in many
aorta:
123.9
synovial tissue:
121.3
FOSB
ENSSSCG00000031616
ENSG00000125740
FosB proto-oncogene, AP-1 transcription factor subunit
Tissue enhanced
Detected in many
aorta:
129.4
cartilage:
83.1
synovial tissue:
89.9
FOSL1
ENSSSCG00000012967
ENSG00000175592
FOS like 1, AP-1 transcription factor subunit
Tissue enhanced
Detected in all
ovary:
34.3
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