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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14921 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AGT
ENSSSCG00000010184
ENSG00000135744
Angiotensinogen
Tissue enhanced
Detected in many
adipose tissue:
99.8
brain:
96.0
liver:
70.3
AGTPBP1
ENSSSCG00000010957
ENSG00000135049
ATP/GTP binding protein 1
Tissue enhanced
Detected in all
brain:
24.7
AGTR1
ENSSSCG00000011695
ENSG00000144891
Type-1 angiotensin II receptor
Tissue enhanced
Detected in many
adipose tissue:
29.1
AGTRAP
ENSSSCG00000022401
ENSG00000177674
Angiotensin II receptor associated protein
Low tissue specificity
Detected in all
AGXT
ENSSSCG00000016402
ENSG00000172482
Alanine-glyoxylate aminotransferase
Group enriched
Detected in some
kidney:
67.1
liver:
90.1
AGXT2
ENSSSCG00000016829
ENSG00000113492
Alanine--glyoxylate aminotransferase 2, mitochondrial
Group enriched
Detected in all
kidney:
36.1
liver:
106.3
AHCTF1
ENSSSCG00000010863
ENSG00000153207
AT-hook containing transcription factor 1
Low tissue specificity
Detected in all
AHCY
ENSSSCG00000007278
Adenosylhomocysteinase
Low tissue specificity
Detected in all
AHCYL1
ENSSSCG00000006816
ENSG00000168710
Adenosylhomocysteinase 2
Low tissue specificity
Detected in all
AHCYL2
ENSSSCG00000016568
ENSG00000158467
Adenosylhomocysteinase like 2
Tissue enhanced
Detected in all
choroid plexus:
93.8
large intestine:
59.1
AHDC1
ENSSSCG00000003579
ENSG00000126705
AT-hook DNA binding motif containing 1
Low tissue specificity
Detected in all
AHI1
ENSSSCG00000004166
ENSG00000135541
Abelson helper integration site 1
Tissue enhanced
Detected in all
brain:
51.3
AHNAK
ENSSSCG00000033010
ENSG00000124942
AHNAK nucleoprotein
Low tissue specificity
Detected in all
AHR
ENSSSCG00000030484
ENSG00000106546,ENSG00000283321
Aryl hydrocarbon receptor
Low tissue specificity
Detected in all
AHSA1
ENSSSCG00000002406
ENSG00000100591
Activator of HSP90 ATPase activity 1
Low tissue specificity
Detected in all
AHSG
ENSSSCG00000011799
ENSG00000145192
Alpha 2-HS glycoprotein
Tissue enriched
Detected in some
liver:
300.9
AHSP
ENSSSCG00000037878
ENSG00000169877
Alpha hemoglobin stabilizing protein
Tissue enhanced
Detected in all
dura mater:
33.0
AICDA
ENSSSCG00000000667
ENSG00000111732
Activation induced cytidine deaminase
Tissue enhanced
Detected in many
lymphoid tissue:
22.1
upper respiratory system:
18.7
AIDA
ENSSSCG00000010835
ENSG00000186063
Axin interactor, dorsalization associated
Low tissue specificity
Detected in all
AIF1
ENSSSCG00000032341
ENSG00000204472
Allograft inflammatory factor 1
Low tissue specificity
Detected in all
AIF1L
ENSSSCG00000034178
ENSG00000126878
Allograft inflammatory factor 1 like
Tissue enhanced
Detected in many
brain:
93.1
cartilage:
55.4
vagus nerve:
51.7
AIFM1
ENSSSCG00000012657
ENSG00000156709
Apoptosis-inducing factor 1, mitochondrial
Low tissue specificity
Detected in all
AIFM2
ENSSSCG00000010258
ENSG00000042286
Apoptosis inducing factor, mitochondria associated 2
Tissue enhanced
Detected in all
adipose tissue:
40.1
testis:
38.3
AIG1
ENSSSCG00000004136
ENSG00000146416
Androgen induced 1
Low tissue specificity
Detected in all
AIMP1
ENSSSCG00000024168
ENSG00000164022
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1
Low tissue specificity
Detected in all
AIMP2
ENSSSCG00000024245
ENSG00000106305
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 isoform 1
Low tissue specificity
Detected in all
AIP
ENSSSCG00000012904
ENSG00000110711
Aryl hydrocarbon receptor interacting protein
Low tissue specificity
Detected in all
AJUBA
ENSSSCG00000029201
ENSG00000129474
Ajuba LIM protein
Low tissue specificity
Detected in all
AK6
ENSSSCG00000037053
ENSG00000085231
Adenylate kinase 6
Low tissue specificity
Detected in all
AK8
ENSSSCG00000039188
ENSG00000165695
Adenylate kinase 8
Tissue enhanced
Detected in all
fallopian tube:
28.4
testis:
33.9
upper respiratory system:
32.2
AKAIN1
ENSSSCG00000038232
ENSG00000231824
A-kinase anchor inhibitor 1
Tissue enhanced
Detected in all
adrenal gland:
38.5
pituitary gland:
39.9
AKAP1
ENSSSCG00000034994
ENSG00000121057
A-kinase anchor protein 1, mitochondrial
Tissue enhanced
Detected in all
heart:
54.5
testis:
78.8
AKAP10
ENSSSCG00000024030
ENSG00000108599
A-kinase anchor protein 10, mitochondrial
Low tissue specificity
Detected in all
AKAP12
ENSSSCG00000031733
ENSG00000131016
A-kinase anchoring protein 12
Low tissue specificity
Detected in many
AKAP17A
ENSSSCG00000032986
ENSG00000197976
A-kinase anchoring protein 17A
Tissue enhanced
Detected in all
stomach:
69.3
AKAP3
ENSSSCG00000000720
ENSG00000111254
A-kinase anchor protein 3
Tissue enriched
Detected in many
testis:
78.4
AKAP5
ENSSSCG00000002268
ENSG00000179841
A-kinase anchoring protein 5
Tissue enriched
Detected in many
brain:
44.5
AKAP7
ENSSSCG00000036790
ENSG00000118507
A-kinase anchoring protein 7
Low tissue specificity
Detected in all
AKAP8
ENSSSCG00000013837
ENSG00000105127
A-kinase anchoring protein 8
Low tissue specificity
Detected in all
AKAP8L
ENSSSCG00000013838
ENSG00000011243
A-kinase anchoring protein 8 like
Low tissue specificity
Detected in all
AKAP9
ENSSSCG00000015310
ENSG00000127914
A-kinase anchor protein 9
Low tissue specificity
Detected in all
AKIP1
ENSSSCG00000033335
ENSG00000166452
A-kinase interacting protein 1
Low tissue specificity
Detected in all
AKIRIN1
ENSSSCG00000003652
ENSG00000174574
Akirin-1
Low tissue specificity
Detected in all
AKIRIN2
ENSSSCG00000004307
ENSG00000135334
Akirin-2
Low tissue specificity
Detected in all
AKNA
ENSSSCG00000023894
ENSG00000106948
AT-hook transcription factor
Tissue enhanced
Detected in many
lymphoid tissue:
50.5
stomach:
46.5
AKR1A1
ENSSSCG00000029256
ENSG00000117448
Alcohol dehydrogenase
Low tissue specificity
Detected in all
AKR1B1
ENSSSCG00000040608
ENSG00000085662
Aldose reductase
Tissue enhanced
Detected in all
kidney:
55.9
lens:
113.2
male glands:
56.6
AKR1D1
ENSSSCG00000016519
ENSG00000122787
Aldo-keto reductase family 1 member D1
Tissue enriched
Detected in some
liver:
134.2
AKR1E2
ENSSSCG00000036941
ENSG00000165568
1,5-anhydro-D-fructose reductase
Tissue enriched
Detected in many
kidney:
93.3
AKR7A2
ENSSSCG00000003491
ENSG00000053371,ENSG00000162482
Aflatoxin B1 aldehyde reductase member 2
Tissue enhanced
Detected in all
kidney:
78.9
liver:
51.0
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