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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KLC2
ENSSSCG00000012955
ENSG00000174996
Kinesin light chain 2
Tissue enhanced
Detected in all
brain:
41.1
KLC4
ENSSSCG00000001659
ENSG00000137171
Kinesin light chain 4
Low tissue specificity
Detected in all
KLF10
ENSSSCG00000027480
ENSG00000155090
Krueppel-like factor 10
Low tissue specificity
Detected in all
KLF11
ENSSSCG00000038643
ENSG00000172059
Krueppel-like factor 11
Low tissue specificity
Detected in all
KLF12
ENSSSCG00000025130
ENSG00000118922
Krueppel-like factor 12
Low tissue specificity
Detected in all
KLF13
ENSSSCG00000026006
ENSG00000169926
Krueppel-like factor 13
Low tissue specificity
Detected in all
KLF15
ENSSSCG00000036742
ENSG00000163884
Krueppel-like factor 15
Tissue enhanced
Detected in all
liver:
54.8
KLF16
ENSSSCG00000024672
ENSG00000129911
Krueppel-like factor 16
Low tissue specificity
Detected in all
KLF17
ENSSSCG00000024191
ENSG00000171872
Krueppel-like factor 17
Tissue enhanced
Detected in all
testis:
13.2
KLF3
ENSSSCG00000036488
ENSG00000109787
Krueppel-like factor 3
Low tissue specificity
Detected in all
KLF6
ENSSSCG00000035212
ENSG00000067082
Krueppel-like factor 6
Low tissue specificity
Detected in all
KLF7
ENSSSCG00000029998
ENSG00000118263
Krueppel-like factor 7
Low tissue specificity
Detected in all
KLF8
ENSSSCG00000012352
ENSG00000102349
Krueppel-like factor 8
Tissue enhanced
Detected in many
skin:
34.8
KLF9
ENSSSCG00000021646
ENSG00000119138
Krueppel-like factor 9
Low tissue specificity
Detected in all
KLHDC1
ENSSSCG00000032489
ENSG00000197776
Kelch domain containing 1
Low tissue specificity
Detected in all
KLHDC10
ENSSSCG00000027131
ENSG00000128607
Kelch domain containing 10
Tissue enhanced
Detected in all
pituitary gland:
56.6
KLHDC2
ENSSSCG00000005009
ENSG00000165516
Kelch domain containing 2
Low tissue specificity
Detected in all
KLHDC3
ENSSSCG00000022901
ENSG00000124702
Kelch domain-containing protein 3
Tissue enhanced
Detected in all
testis:
79.7
KLHDC4
ENSSSCG00000002652
ENSG00000104731
Kelch domain-containing protein 4
Tissue enhanced
Detected in all
male glands:
36.6
KLHDC8A
ENSSSCG00000023441
ENSG00000162873
Kelch domain containing 8A
Group enriched
Detected in some
brain:
32.8
pineal gland:
28.0
retina:
32.4
KLHDC8B
ENSSSCG00000011379
ENSG00000185909
Kelch domain containing 8B
Low tissue specificity
Detected in all
KLHDC9
ENSSSCG00000038597
ENSG00000162755
Kelch domain containing 9
Low tissue specificity
Detected in all
KLHL11
ENSSSCG00000032404
ENSG00000178502
Kelch like family member 11
Low tissue specificity
Detected in all
KLHL12
ENSSSCG00000010931
ENSG00000117153
Adiponectin receptor protein 1
Low tissue specificity
Detected in all
KLHL13
ENSSSCG00000012637
ENSG00000003096
Kelch like family member 13
Tissue enhanced
Detected in many
brain:
33.2
epididymis:
38.4
KLHL14
ENSSSCG00000003733
ENSG00000197705
Kelch like family member 14
Tissue enhanced
Detected in many
kidney:
16.0
male glands:
43.9
thyroid gland:
26.4
KLHL15
ENSSSCG00000027652
ENSG00000174010
Kelch like family member 15
Low tissue specificity
Detected in all
KLHL17
ENSSSCG00000030000
ENSG00000187961
Kelch like family member 17
Low tissue specificity
Detected in all
KLHL18
ENSSSCG00000024513
ENSG00000114648
Kelch like family member 18
Low tissue specificity
Detected in all
KLHL2
ENSSSCG00000008858
ENSG00000109466
Kelch like family member 2
Tissue enhanced
Detected in all
brain:
40.9
KLHL20
ENSSSCG00000015497
ENSG00000076321
Kelch like family member 20
Low tissue specificity
Detected in all
KLHL21
ENSSSCG00000003379
ENSG00000162413
Kelch like family member 21
Low tissue specificity
Detected in all
KLHL22
ENSSSCG00000010108
ENSG00000099910
Kelch like family member 22
Low tissue specificity
Detected in all
KLHL24
ENSSSCG00000011775
ENSG00000114796
Kelch like family member 24
Low tissue specificity
Detected in all
KLHL25
ENSSSCG00000002258
ENSG00000183655
Kelch like family member 25
Tissue enriched
Detected in many
lens:
96.2
KLHL26
ENSSSCG00000013913
ENSG00000167487
Kelch like family member 26
Low tissue specificity
Detected in all
KLHL28
ENSSSCG00000004996
ENSG00000179454
Kelch like family member 28
Low tissue specificity
Detected in all
KLHL29
ENSSSCG00000008593
ENSG00000119771
Kelch like family member 29
Tissue enhanced
Detected in many
cartilage:
34.0
KLHL3
ENSSSCG00000014321
ENSG00000146021
Kelch like family member 3
Tissue enhanced
Detected in many
liver:
27.0
vagus nerve:
19.8
KLHL30
ENSSSCG00000026600
ENSG00000168427
Kelch like family member 30
Tissue enhanced
Detected in all
heart:
24.6
KLHL32
ENSSSCG00000027002
ENSG00000186231
Kelch like family member 32
Tissue enhanced
Detected in all
male glands:
33.0
KLHL34
ENSSSCG00000033979
ENSG00000185915
Kelch like family member 34
Tissue enhanced
Detected in some
skeletal muscle:
22.2
synovial tissue:
8.7
vagus nerve:
5.7
KLHL36
ENSSSCG00000038285
ENSG00000135686
Kelch like family member 36
Low tissue specificity
Detected in all
KLHL42
ENSSSCG00000000545
ENSG00000087448
Kelch like family member 42
Low tissue specificity
Detected in all
KLHL5
ENSSSCG00000008787
ENSG00000109790
Kelch like family member 5
Tissue enhanced
Detected in all
choroid plexus:
65.8
KLHL8
ENSSSCG00000009226
ENSG00000145332
Kelch like family member 8
Tissue enhanced
Detected in all
choroid plexus:
34.7
KLHL9
ENSSSCG00000005150
ENSG00000198642
Kelch like family member 9
Low tissue specificity
Detected in all
KLK11
ENSSSCG00000038283
ENSG00000167757
Kallikrein related peptidase 11
Low tissue specificity
Detected in all
KLK12
ENSSSCG00000032280
ENSG00000186474
Kallikrein related peptidase 12
Low tissue specificity
Detected in all
KLK14
ENSSSCG00000036362
ENSG00000129437
Kallikrein related peptidase 14
Low tissue specificity
Detected in all
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