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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HTR3D
ENSSSCG00000011784
ENSG00000186090
5-hydroxytryptamine receptor 3D
Tissue enhanced
Detected in some
ovary:
5.3
HTR4
ENSSSCG00000014428
ENSG00000164270
5-hydroxytryptamine receptor 4
Tissue enhanced
Detected in many
epididymis:
23.1
lens:
25.9
small intestine:
32.0
testis:
33.2
HTRA2
ENSSSCG00000039882
ENSG00000115317
HtrA serine peptidase 2
Low tissue specificity
Detected in all
HTRA3
ENSSSCG00000008723
ENSG00000170801
Serine protease HTRA3 precursor
Tissue enhanced
Detected in many
lens:
46.6
mesothelial tissue:
88.8
HTRA4
ENSSSCG00000015810
ENSG00000169495
HtrA serine peptidase 4
Group enriched
Detected in many
cartilage:
44.7
lymphoid tissue:
22.2
synovial tissue:
57.7
HTT
ENSSSCG00000008697
ENSG00000197386
Huntingtin
Low tissue specificity
Detected in all
HUNK
ENSSSCG00000029392
ENSG00000142149
Hormonally up-regulated Neu-associated kinase
Tissue enhanced
Detected in many
cornea:
35.6
lens:
35.0
ovary:
37.7
HUS1
ENSSSCG00000028523
ENSG00000136273
Checkpoint protein HUS1
Low tissue specificity
Detected in all
HUWE1
ENSSSCG00000012328
ENSG00000086758
HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase
Low tissue specificity
Detected in all
HYAL1
ENSSSCG00000011404
ENSG00000114378
Hyaluronidase-1 precursor
Tissue enhanced
Detected in many
gallbladder:
31.6
large intestine:
32.2
stomach:
37.6
HYAL2
ENSSSCG00000011405
ENSG00000068001
Hyaluronidase-2 precursor
Tissue enhanced
Detected in all
mesothelial tissue:
74.1
HYAL3
ENSSSCG00000011402
ENSG00000186792
Hyaluronidase-3 precursor
Low tissue specificity
Detected in many
HYI
ENSSSCG00000003940
ENSG00000178922
Hydroxypyruvate isomerase (putative)
Tissue enhanced
Detected in all
liver:
74.3
HYKK
ENSSSCG00000001755
ENSG00000188266
Hydroxylysine kinase
Tissue enriched
Detected in all
pineal gland:
40.3
HYLS1
ENSSSCG00000024913
ENSG00000198331
HYLS1, centriolar and ciliogenesis associated
Tissue enhanced
Detected in all
testis:
46.5
HYOU1
ENSSSCG00000015106
ENSG00000149428
Hypoxia up-regulated 1
Tissue enhanced
Detected in all
epididymis:
103.3
HYPK
ENSSSCG00000038436
ENSG00000242028
Huntingtin interacting protein K
Low tissue specificity
Detected in all
IAH1
ENSSSCG00000008640
ENSG00000134330
Isoamyl acetate hydrolyzing esterase 1 (putative)
Low tissue specificity
Detected in all
IARS
ENSSSCG00000008068
ENSG00000196305
Isoleucyl-tRNA synthetase
Low tissue specificity
Detected in all
IARS2
ENSSSCG00000010823
ENSG00000067704
Isoleucyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
IBA57
ENSSSCG00000013988
ENSG00000181873
Putative transferase CAF17, mitochondrial
Low tissue specificity
Detected in all
IBTK
ENSSSCG00000004460
ENSG00000005700
Inhibitor of Bruton tyrosine kinase
Low tissue specificity
Detected in all
ICA1L
ENSSSCG00000016115
ENSG00000163596
Islet cell autoantigen 1 like
Group enriched
Detected in many
brain:
16.6
testis:
52.6
ICE2
ENSSSCG00000004577
ENSG00000128915
Interactor of little elongation complex ELL subunit 2
Low tissue specificity
Detected in all
ICK
ENSSSCG00000002628
ENSG00000112144
Intestinal cell kinase
Low tissue specificity
Detected in all
ICMT
ENSSSCG00000003369
ENSG00000116237
Protein-S-isoprenylcysteine O-methyltransferase
Low tissue specificity
Detected in all
ID1
ENSSSCG00000037016
ENSG00000125968
DNA-binding protein inhibitor ID-1
Tissue enriched
Detected in all
brain:
58.7
ID2
ENSSSCG00000008645
ENSG00000115738
DNA-binding protein inhibitor ID-2
Tissue enhanced
Detected in many
cartilage:
124.2
ID3
ENSSSCG00000039514
ENSG00000117318
DNA-binding protein inhibitor ID-3
Low tissue specificity
Detected in all
ID4
ENSSSCG00000024312
ENSG00000172201
DNA-binding protein inhibitor ID-4
Tissue enhanced
Detected in many
ductus deferens:
49.5
IDE
ENSSSCG00000010470
ENSG00000119912
Insulin degrading enzyme
Low tissue specificity
Detected in all
IDH2
ENSSSCG00000001852
ENSG00000182054
Isocitrate dehydrogenase
Tissue enhanced
Detected in all
heart:
81.1
skeletal muscle:
120.4
IDH3A
ENSSSCG00000032498
ENSG00000166411
Isocitrate dehydrogenase 3 (NAD(+)) alpha
Tissue enhanced
Detected in all
heart:
36.4
IDH3B
ENSSSCG00000007173
ENSG00000101365
Isocitrate dehydrogenase
Tissue enhanced
Detected in all
skeletal muscle:
66.0
IDH3G
ENSSSCG00000012783
ENSG00000067829
Isocitrate dehydrogenase 3 (NAD(+)) gamma
Low tissue specificity
Detected in all
IDNK
ENSSSCG00000035132
ENSG00000148057
IDNK, gluconokinase
Low tissue specificity
Detected in all
IDO1
ENSSSCG00000007007
ENSG00000131203
Indoleamine 2,3-dioxygenase 1
Tissue enhanced
Detected in all
upper respiratory system:
46.9
IDUA
ENSSSCG00000032262
ENSG00000127415
Iduronidase, alpha-L-
Low tissue specificity
Detected in all
IER3
ENSSSCG00000027607
ENSG00000137331
Immediate early response 3
Tissue enhanced
Detected in many
cartilage:
140.2
IER5
ENSSSCG00000015541
ENSG00000162783
Immediate early response gene 5 protein
Low tissue specificity
Detected in all
IFFO1
ENSSSCG00000000695
ENSG00000010295
Intermediate filament family orphan 1
Low tissue specificity
Detected in all
IFI27L2
ENSSSCG00000002472
ENSG00000119632
Interferon alpha inducible protein 27 like 2
Low tissue specificity
Detected in all
IFI35
ENSSSCG00000029763
ENSG00000068079
Interferon induced protein 35
Low tissue specificity
Detected in all
IFI44L
ENSSSCG00000027660
ENSG00000137959
Interferon induced protein 44 like
Low tissue specificity
Detected in all
IFIH1
ENSSSCG00000015897
ENSG00000115267
Interferon-induced helicase C domain-containing protein 1
Low tissue specificity
Detected in all
IFIT1
ENSSSCG00000010452
ENSG00000119917
Interferon-induced protein with tetratricopeptide repeats 1
Low tissue specificity
Detected in all
IFIT2
ENSSSCG00000010451
ENSG00000119922
Interferon-induced protein with tetratricopeptide repeats 2
Low tissue specificity
Detected in all
IFIT5
ENSSSCG00000010454
ENSG00000152778
Interferon-induced protein with tetratricopeptide repeats 5
Low tissue specificity
Detected in all
IFITM3
ENSSSCG00000038912
Interferon-induced transmembrane protein 3
Low tissue specificity
Detected in many
IFN-ALPHA-1
ENSSSCG00000039164
Interferon-alpha-1 precursor
Tissue enhanced
Detected in many
salivary gland:
19.1
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