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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HMGN5
ENSSSCG00000032946
ENSG00000198157
High mobility group nucleosome binding domain 5
Tissue enhanced
Detected in all
lymphoid tissue:
21.5
HMGXB3
ENSSSCG00000014440
ENSG00000113716
HMG-box containing 3
Low tissue specificity
Detected in all
HMGXB4
ENSSSCG00000025780
ENSG00000100281
HMG-box containing 4
Low tissue specificity
Detected in all
HMMR
ENSSSCG00000017022
ENSG00000072571
Hyaluronan mediated motility receptor
Low tissue specificity
Detected in all
HMOX2
ENSSSCG00000007942
ENSG00000103415
Heme oxygenase 2
Low tissue specificity
Detected in all
HMX1
ENSSSCG00000008720
ENSG00000215612
H6 family homeobox 1
Tissue enriched
Detected in some
lens:
39.2
HNF1B
ENSSSCG00000022417
ENSG00000275410
Hepatocyte nuclear factor 1-beta
Tissue enhanced
Detected in many
gallbladder:
24.5
kidney:
75.6
HNF4G
ENSSSCG00000034242
ENSG00000164749
Hepatocyte nuclear factor 4 gamma
Group enriched
Detected in some
large intestine:
44.1
small intestine:
52.4
HNMT
ENSSSCG00000035195
ENSG00000150540
Histamine N-methyltransferase
Low tissue specificity
Detected in all
HNRNPA2B1
ENSSSCG00000036350
ENSG00000122566
Heterogeneous nuclear ribonucleoprotein A2/B1
Low tissue specificity
Detected in all
HNRNPD
ENSSSCG00000009249
ENSG00000138668
Heterogeneous nuclear ribonucleoprotein D
Low tissue specificity
Detected in all
HNRNPDL
ENSSSCG00000037245
ENSG00000152795
Heterogeneous nuclear ribonucleoprotein D like
Low tissue specificity
Detected in all
HNRNPF
ENSSSCG00000010203
ENSG00000169813
Heterogeneous nuclear ribonucleoprotein F
Low tissue specificity
Detected in all
HNRNPH1
ENSSSCG00000014022
ENSG00000169045
Heterogeneous nuclear ribonucleoprotein H1
Low tissue specificity
Detected in all
HNRNPH2
ENSSSCG00000033161
ENSG00000126945
Heterogeneous nuclear ribonucleoprotein H2
Low tissue specificity
Detected in all
HNRNPH3
ENSSSCG00000010238
ENSG00000096746
Heterogeneous nuclear ribonucleoprotein H3
Low tissue specificity
Detected in all
HNRNPLL
ENSSSCG00000020878
ENSG00000143889
Heterogeneous nuclear ribonucleoprotein L like
Low tissue specificity
Detected in all
HNRNPM
ENSSSCG00000013602
ENSG00000099783
Heterogeneous nuclear ribonucleoprotein M
Low tissue specificity
Detected in all
HNRNPR
ENSSSCG00000023761
ENSG00000125944
Heterogeneous nuclear ribonucleoprotein R
Low tissue specificity
Detected in all
HNRNPU
ENSSSCG00000010877
ENSG00000153187
Heterogeneous nuclear ribonucleoprotein U
Low tissue specificity
Detected in all
HNRNPUL1
ENSSSCG00000030049
ENSG00000105323
Heterogeneous nuclear ribonucleoprotein U like 1
Low tissue specificity
Detected in all
HOGA1
ENSSSCG00000010523
ENSG00000241935
4-hydroxy-2-oxoglutarate aldolase, mitochondrial
Group enriched
Detected in many
kidney:
67.9
liver:
30.6
HOMER1
ENSSSCG00000014113
ENSG00000152413
Homer protein homolog 1
Tissue enhanced
Detected in many
brain:
51.9
skeletal muscle:
39.4
HOMER2
ENSSSCG00000001804
ENSG00000103942
Homer scaffolding protein 2
Tissue enhanced
Detected in many
salivary gland:
47.6
HOMEZ
ENSSSCG00000028190
ENSG00000215271
Homeobox and leucine zipper encoding
Tissue enhanced
Detected in all
testis:
53.1
HOOK1
ENSSSCG00000003826
ENSG00000134709
Hook microtubule tethering protein 1
Tissue enhanced
Detected in many
pineal gland:
51.2
salivary gland:
64.1
testis:
39.8
HOXB8
ENSSSCG00000017537
ENSG00000120068
Homeobox B8
Tissue enhanced
Detected in many
epididymis:
62.0
male glands:
53.0
HP1BP3
ENSSSCG00000003511
ENSG00000127483
Heterochromatin protein 1 binding protein 3
Low tissue specificity
Detected in all
HPCAL1
ENSSSCG00000003663
ENSG00000115756
Hippocalcin-like protein 1
Tissue enhanced
Detected in all
brain:
70.4
HPF1
ENSSSCG00000009711
ENSG00000056050
Histone PARylation factor 1
Low tissue specificity
Detected in all
HPGD
ENSSSCG00000009699
ENSG00000164120
15-hydroxyprostaglandin dehydrogenase
Low tissue specificity
Detected in all
HPN
ENSSSCG00000021867
ENSG00000105707
Hepsin
Group enriched
Detected in all
kidney:
43.4
liver:
93.6
male glands:
36.2
HPS1
ENSSSCG00000010534
ENSG00000107521
Hermansky-Pudlak syndrome 1 protein
Low tissue specificity
Detected in all
HPS3
ENSSSCG00000011699
ENSG00000163755
Hermansky-Pudlak syndrome 3 protein
Low tissue specificity
Detected in all
HPS4
ENSSSCG00000009960
ENSG00000100099
Hermansky-Pudlak syndrome 4 protein
Low tissue specificity
Detected in all
HPSE
ENSSSCG00000009237
ENSG00000173083
Heparanase precursor
Tissue enhanced
Detected in all
lymphoid tissue:
34.9
HRAS
ENSSSCG00000031513
ENSG00000174775
HRas proto-oncogene, GTPase
Tissue enhanced
Detected in all
lens:
85.8
HRASLS
ENSSSCG00000036094
ENSG00000127252
HRAS like suppressor
Low tissue specificity
Detected in all
HRASLS5
ENSSSCG00000021482
ENSG00000168004
HRAS like suppressor family member 5
Tissue enriched
Detected in many
testis:
64.4
HRCT1
ENSSSCG00000035720
ENSG00000196196
Histidine rich carboxyl terminus 1
Tissue enhanced
Detected in many
penis:
46.2
HRH1
ENSSSCG00000011576
ENSG00000196639
Histamine receptor H1
Low tissue specificity
Detected in all
HRH2
ENSSSCG00000029096
ENSG00000113749
Histamine receptor H2
Low tissue specificity
Detected in all
HRH4
ENSSSCG00000003714
ENSG00000134489
Histamine H4 receptor
Low tissue specificity
Detected in many
HS1BP3
ENSSSCG00000030115
ENSG00000118960
HCLS1 binding protein 3
Low tissue specificity
Detected in all
HS3ST1
ENSSSCG00000021515
ENSG00000002587
Heparan sulfate-glucosamine 3-sulfotransferase 1
Tissue enhanced
Detected in many
cartilage:
54.1
epididymis:
32.4
HS3ST2
ENSSSCG00000036475
ENSG00000122254
Heparan sulfate-glucosamine 3-sulfotransferase 2
Low tissue specificity
Detected in all
HS3ST6
ENSSSCG00000031216
ENSG00000162040
Heparan sulfate-glucosamine 3-sulfotransferase 6
Tissue enhanced
Detected in all
adipose tissue:
38.5
HS6ST1
ENSSSCG00000022197
ENSG00000136720
Heparan sulfate 6-O-sulfotransferase 1
Low tissue specificity
Detected in all
HS6ST3
ENSSSCG00000009504
ENSG00000185352
Heparan sulfate 6-O-sulfotransferase 3
Tissue enhanced
Detected in many
brain:
30.3
thyroid gland:
11.0
HSBP1
ENSSSCG00000031892
Heat shock factor-binding protein 1
Low tissue specificity
Detected in all
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