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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CNOT1
ENSSSCG00000002799
ENSG00000125107
CCR4-NOT transcription complex subunit 1
Low tissue specificity
Detected in all
CNOT10
ENSSSCG00000032220
ENSG00000182973
CCR4-NOT transcription complex subunit 10
Low tissue specificity
Detected in all
CNOT11
ENSSSCG00000008167
ENSG00000158435
CCR4-NOT transcription complex subunit 11
Low tissue specificity
Detected in all
CNOT2
ENSSSCG00000000502
ENSG00000111596
CCR4-NOT transcription complex subunit 2
Low tissue specificity
Detected in all
CNOT3
ENSSSCG00000003264
ENSG00000088038
CCR4-NOT transcription complex subunit 3
Low tissue specificity
Detected in all
CNOT4
ENSSSCG00000021354
ENSG00000080802
CCR4-NOT transcription complex subunit 4
Low tissue specificity
Detected in all
CNOT6
ENSSSCG00000014009
ENSG00000113300
CCR4-NOT transcription complex subunit 6
Low tissue specificity
Detected in all
CNOT6L
ENSSSCG00000008989
ENSG00000138767
CCR4-NOT transcription complex subunit 6 like
Low tissue specificity
Detected in all
CNOT7
ENSSSCG00000006983
ENSG00000198791
CCR4-NOT transcription complex subunit 7
Low tissue specificity
Detected in all
CNOT8
ENSSSCG00000017067
ENSG00000155508
CCR4-NOT transcription complex subunit 8
Low tissue specificity
Detected in all
CNOT9
ENSSSCG00000016193
ENSG00000144580
CCR4-NOT transcription complex subunit 9
Low tissue specificity
Detected in all
CNP
ENSSSCG00000017420
ENSG00000173786
2',3'-cyclic nucleotide 3' phosphodiesterase
Group enriched
Detected in all
brain:
221.4
vagus nerve:
74.3
CNPPD1
ENSSSCG00000016206
ENSG00000115649
Cyclin Pas1/PHO80 domain containing 1
Low tissue specificity
Detected in all
CNPY3
ENSSSCG00000001651
ENSG00000137161
Protein canopy homolog 3
Low tissue specificity
Detected in all
CNPY4
ENSSSCG00000032054
ENSG00000166997
Canopy FGF signaling regulator 4
Low tissue specificity
Detected in all
CNRIP1
ENSSSCG00000008349
ENSG00000119865
Cannabinoid receptor interacting protein 1
Tissue enhanced
Detected in many
brain:
52.6
CNST
ENSSSCG00000010882
ENSG00000162852
Consortin, connexin sorting protein
Tissue enriched
Detected in all
pineal gland:
78.6
CNTFR
ENSSSCG00000010974
ENSG00000122756
Ciliary neurotrophic factor receptor
Tissue enhanced
Detected in many
urinary bladder:
60.4
CNTLN
ENSSSCG00000005178
ENSG00000044459
Centlein
Low tissue specificity
Detected in all
CNTN1
ENSSSCG00000000789
ENSG00000018236
Contactin 1
Group enriched
Detected in many
brain:
71.1
pineal gland:
28.9
pituitary gland:
25.1
CNTN3
ENSSSCG00000011522
ENSG00000113805
Contactin 3
Low tissue specificity
Detected in all
CNTN4
ENSSSCG00000011527
ENSG00000144619
Contactin 4
Tissue enriched
Detected in many
pineal gland:
89.6
CNTNAP4
ENSSSCG00000023125
ENSG00000152910
Contactin associated protein like 4
Group enriched
Detected in some
brain:
25.8
fallopian tube:
6.5
male glands:
22.4
pituitary gland:
11.4
CNTROB
ENSSSCG00000017968
ENSG00000170037
Centrobin, centriole duplication and spindle assembly protein
Low tissue specificity
Detected in all
COA3
ENSSSCG00000017388
ENSG00000183978
Cytochrome c oxidase assembly factor 3
Low tissue specificity
Detected in all
COA4
ENSSSCG00000014830
ENSG00000181924
Cytochrome c oxidase assembly factor 4 homolog
Low tissue specificity
Detected in all
COASY
ENSSSCG00000017398
ENSG00000068120
Bifunctional coenzyme A synthase Phosphopantetheine adenylyltransferase Dephospho-CoA kinase
Low tissue specificity
Detected in all
COG1
ENSSSCG00000017248
ENSG00000166685
Component of oligomeric golgi complex 1
Low tissue specificity
Detected in all
COG2
ENSSSCG00000010183
ENSG00000135775
Component of oligomeric golgi complex 2
Low tissue specificity
Detected in all
COG3
ENSSSCG00000023738
ENSG00000136152
Component of oligomeric golgi complex 3
Tissue enhanced
Detected in all
heart:
91.4
COG4
ENSSSCG00000027973
ENSG00000103051
Conserved oligomeric Golgi complex subunit 4
Low tissue specificity
Detected in all
COG5
ENSSSCG00000037556
ENSG00000164597
Component of oligomeric golgi complex 5
Tissue enhanced
Detected in all
lens:
49.9
COG6
ENSSSCG00000009369
ENSG00000133103
Component of oligomeric golgi complex 6
Low tissue specificity
Detected in all
COG7
ENSSSCG00000010799
ENSG00000168434
Component of oligomeric golgi complex 7
Low tissue specificity
Detected in all
COIL
ENSSSCG00000017613
ENSG00000121058
Coilin
Tissue enriched
Detected in all
testis:
64.7
COL14A1
ENSSSCG00000005997
ENSG00000187955
Collagen type XIV alpha 1 chain
Low tissue specificity
Detected in all
COL23A1
ENSSSCG00000014029
ENSG00000050767
Collagen type XXIII alpha 1 chain
Tissue enhanced
Detected in many
ductus deferens:
29.1
epididymis:
45.5
thyroid gland:
24.9
COL26A1
ENSSSCG00000007678
ENSG00000160963
Collagen type XXVI alpha 1 chain
Tissue enhanced
Detected in many
adipose tissue:
31.0
lymphoid tissue:
16.8
ovary:
13.3
COL4A2
ENSSSCG00000009545
ENSG00000134871
Collagen type IV alpha 2 chain
Tissue enhanced
Detected in many
adipose tissue:
88.3
lens:
90.1
COL4A3BP
ENSSSCG00000014081
ENSG00000113163
Collagen type IV alpha 3 binding protein
Low tissue specificity
Detected in all
COL4A4
ENSSSCG00000016244
ENSG00000081052
Collagen type IV alpha 4 chain
Group enriched
Detected in some
cornea:
48.5
lens:
82.9
COL4A5
ENSSSCG00000012572
ENSG00000188153
Collagen type IV alpha 5 chain
Tissue enriched
Detected in many
lens:
107.3
COL5A1
ENSSSCG00000005751
ENSG00000130635
Collagen alpha-1(V) chain precursor
Tissue enhanced
Detected in many
cartilage:
124.1
COL6A2
ENSSSCG00000028022
ENSG00000142173
Collagen type VI alpha 2 chain
Tissue enhanced
Detected in all
cartilage:
281.6
synovial tissue:
155.1
COL8A2
ENSSSCG00000033641
ENSG00000171812
Collagen type VIII alpha 2 chain
Tissue enhanced
Detected in many
cornea:
73.0
dura mater:
18.9
COLEC11
ENSSSCG00000025629
ENSG00000118004
Collectin subfamily member 11
Tissue enriched
Detected in all
liver:
41.1
COLEC12
ENSSSCG00000040397
ENSG00000158270
Collectin subfamily member 12
Tissue enhanced
Detected in many
cartilage:
131.9
synovial tissue:
54.7
COLGALT1
ENSSSCG00000013883
ENSG00000130309
Collagen beta(1-O)galactosyltransferase 1
Low tissue specificity
Detected in all
COLGALT2
ENSSSCG00000030217
ENSG00000198756
Collagen beta(1-O)galactosyltransferase 2
Tissue enhanced
Detected in many
cartilage:
67.3
cornea:
37.8
COLQ
ENSSSCG00000028911
ENSG00000206561
Collagen like tail subunit of asymmetric acetylcholinesterase
Tissue enhanced
Detected in many
kidney:
19.9
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