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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TCTN3
ENSSSCG00000010496
ENSG00000119977
Tectonic family member 3
Low tissue specificity
Detected in all
TDG
ENSSSCG00000000847
ENSG00000139372
Thymine DNA glycosylase
Low tissue specificity
Detected in all
TDP1
ENSSSCG00000002431
ENSG00000042088
Tyrosyl-DNA phosphodiesterase 1
Low tissue specificity
Detected in all
TDP2
ENSSSCG00000001092
ENSG00000111802
Tyrosyl-DNA phosphodiesterase 2
Low tissue specificity
Detected in all
TDRD3
ENSSSCG00000009449
ENSG00000083544
Tudor domain containing 3
Low tissue specificity
Detected in all
TDRD7
ENSSSCG00000005364
ENSG00000196116
Tudor domain containing 7
Tissue enriched
Detected in many
lens:
392.7
TDRKH
ENSSSCG00000027770
ENSG00000182134
Tudor and KH domain-containing protein
Tissue enhanced
Detected in many
brain:
13.2
retina:
13.4
testis:
39.6
TEAD1
ENSSSCG00000013399
ENSG00000187079
Transcriptional enhancer factor TEF-1
Tissue enhanced
Detected in all
skeletal muscle:
79.7
TEAD2
ENSSSCG00000025568
ENSG00000074219
TEA domain transcription factor 2
Low tissue specificity
Detected in all
TEAD3
ENSSSCG00000001544
ENSG00000007866
Transcriptional enhancer factor TEF-5
Low tissue specificity
Detected in all
TEC
ENSSSCG00000008820
ENSG00000135605
Tec protein tyrosine kinase
Low tissue specificity
Detected in many
TECPR1
ENSSSCG00000007601
ENSG00000205356
Tectonin beta-propeller repeat containing 1
Tissue enhanced
Detected in many
salivary gland:
36.8
TECPR2
ENSSSCG00000002528
ENSG00000196663
Tectonin beta-propeller repeat containing 2
Low tissue specificity
Detected in all
TECR
ENSSSCG00000031299
ENSG00000099797
Trans-2,3-enoyl-CoA reductase
Low tissue specificity
Detected in all
TECTA
ENSSSCG00000023728
ENSG00000109927
Tectorin alpha
Low tissue specificity
Detected in all
TEDC1
ENSSSCG00000040089
ENSG00000185347
Tubulin epsilon and delta complex 1
Low tissue specificity
Detected in all
TEDC2
ENSSSCG00000008055
ENSG00000162062
Tubulin epsilon and delta complex 2
Tissue enhanced
Detected in all
epididymis:
26.3
TEF
ENSSSCG00000035152
ENSG00000167074
TEF, PAR bZIP transcription factor
Low tissue specificity
Detected in all
TEFM
ENSSSCG00000017741
ENSG00000172171
Transcription elongation factor, mitochondrial
Low tissue specificity
Detected in all
TEKT1
ENSSSCG00000017884
ENSG00000167858
Tektin 1
Tissue enhanced
Detected in all
fallopian tube:
43.2
TEKT3
ENSSSCG00000018028
ENSG00000125409
Tektin 3
Tissue enriched
Detected in some
testis:
68.4
TELO2
ENSSSCG00000008022
ENSG00000100726
Telomere maintenance 2
Low tissue specificity
Detected in all
TEN1
ENSSSCG00000017194
ENSG00000257949
TEN1, CST complex subunit
Low tissue specificity
Detected in all
TENM4
ENSSSCG00000014894
ENSG00000149256
Teneurin transmembrane protein 4
Low tissue specificity
Detected in many
TEPSIN
ENSSSCG00000028593
ENSG00000167302
AP-4 complex accessory subunit tepsin
Low tissue specificity
Detected in all
TERB1
ENSSSCG00000035104
ENSG00000249961
Telomere repeat binding bouquet formation protein 1
Tissue enhanced
Detected in many
testis:
20.9
TERB2
ENSSSCG00000004680
ENSG00000167014
Telomere repeat binding bouquet formation protein 2
Low tissue specificity
Detected in all
TERF1
ENSSSCG00000006184
ENSG00000147601
Telomeric repeat binding factor 1
Low tissue specificity
Detected in all
TERF2
ENSSSCG00000002762
ENSG00000132604
Telomeric repeat binding factor 2
Low tissue specificity
Detected in all
TES
ENSSSCG00000040344
ENSG00000135269
Testin
Tissue enhanced
Detected in many
cervix:
31.2
smooth muscle:
58.0
TESC
ENSSSCG00000009859
ENSG00000088992
Tescalcin
Tissue enhanced
Detected in many
male glands:
41.5
salivary gland:
93.2
TESK1
ENSSSCG00000005310
ENSG00000107140
Testis-specific kinase 1
Low tissue specificity
Detected in all
TESK2
ENSSSCG00000003917
ENSG00000070759
Testis-specific kinase 2
Tissue enriched
Detected in all
lens:
130.5
TESPA1
ENSSSCG00000000299
ENSG00000135426
Thymocyte expressed, positive selection associated 1
Tissue enhanced
Detected in all
lymphoid tissue:
105.1
TET1
ENSSSCG00000010241
ENSG00000138336
Methylcytosine dioxygenase TET1
Low tissue specificity
Detected in all
TET2
ENSSSCG00000009157
ENSG00000168769
Tet methylcytosine dioxygenase 2
Low tissue specificity
Detected in all
TET3
ENSSSCG00000008292
ENSG00000187605
Tet methylcytosine dioxygenase 3
Tissue enhanced
Detected in all
stomach:
62.2
TEX10
ENSSSCG00000005389
ENSG00000136891
Testis expressed 10
Low tissue specificity
Detected in all
TEX11
ENSSSCG00000030850
ENSG00000120498
Testis expressed 11
Low tissue specificity
Detected in all
TEX12
ENSSSCG00000022445
ENSG00000150783
Testis expressed 12
Tissue enriched
Detected in some
testis:
14.2
TEX14
ENSSSCG00000017645
ENSG00000121101
Testis expressed 14, intercellular bridge forming factor
Tissue enriched
Detected in many
testis:
41.3
TEX2
ENSSSCG00000017278
ENSG00000136478
Testis expressed 2
Tissue enhanced
Detected in all
testis:
93.8
TEX22
ENSSSCG00000036444
ENSG00000226174
Testis expressed 22
Tissue enhanced
Detected in many
testis:
27.0
TEX26
ENSSSCG00000009332
ENSG00000175664
Testis expressed 26
Tissue enhanced
Detected in many
fallopian tube:
24.6
mesothelial tissue:
20.7
testis:
45.8
TEX264
ENSSSCG00000011424
ENSG00000164081
Testis expressed 264
Low tissue specificity
Detected in all
TEX30
ENSSSCG00000009531
ENSG00000151287
Testis expressed 30
Tissue enriched
Detected in all
testis:
33.9
TEX36
ENSSSCG00000032832
ENSG00000175018
Testis expressed 36
Low tissue specificity
Detected in all
TEX9
ENSSSCG00000004602
ENSG00000151575
Testis-expressed sequence 9 protein
Tissue enhanced
Detected in all
skeletal muscle:
82.2
TF
ENSSSCG00000011640
ENSG00000091513
Serotransferrin precursor
Group enriched
Detected in some
brain:
181.5
liver:
347.8
TFAM
ENSSSCG00000040185
ENSG00000108064
Transcription factor A, mitochondrial
Low tissue specificity
Detected in all
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