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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
STAT5A
ENSSSCG00000017402
ENSG00000126561
Signal transducer and activator of transcription 5A
Low tissue specificity
Detected in all
STAT5B
ENSSSCG00000017406
ENSG00000173757
Signal transducer and activator of transcription 5B
Low tissue specificity
Detected in all
STAU1
ENSSSCG00000027444
ENSG00000124214
Staufen double-stranded RNA binding protein 1
Low tissue specificity
Detected in all
STC1
ENSSSCG00000009642
ENSG00000159167
Stanniocalcin-1 precursor
Tissue enhanced
Detected in all
mesothelial tissue:
60.3
STC2
ENSSSCG00000016983
ENSG00000113739
Stanniocalcin-2 precursor
Tissue enhanced
Detected in all
cartilage:
31.8
STEAP1
ENSSSCG00000015301
ENSG00000164647
Metalloreductase STEAP1
Tissue enhanced
Detected in many
choroid plexus:
15.9
STEAP2
ENSSSCG00000015302
ENSG00000157214
STEAP2 metalloreductase
Low tissue specificity
Detected in all
STIL
ENSSSCG00000003888
ENSG00000123473
STIL, centriolar assembly protein
Low tissue specificity
Detected in all
STIM2
ENSSSCG00000008762
ENSG00000109689
Stromal interaction molecule 2
Low tissue specificity
Detected in all
STIP1
ENSSSCG00000021620
ENSG00000168439
Stress induced phosphoprotein 1
Tissue enhanced
Detected in all
lens:
99.6
STK10
ENSSSCG00000022478
ENSG00000072786
Serine/threonine kinase 10
Low tissue specificity
Detected in all
STK11
ENSSSCG00000013429
ENSG00000118046
Serine/threonine kinase 11
Low tissue specificity
Detected in all
STK11IP
ENSSSCG00000032964
ENSG00000144589
Serine/threonine kinase 11 interacting protein
Low tissue specificity
Detected in all
STK16
ENSSSCG00000016214
ENSG00000115661
Serine/threonine kinase 16
Low tissue specificity
Detected in all
STK19
ENSSSCG00000001426
ENSG00000204344
Serine/threonine-protein kinase 19
Low tissue specificity
Detected in all
STK24
ENSSSCG00000009511
ENSG00000102572
Serine/threonine kinase 24
Low tissue specificity
Detected in all
STK25
ENSSSCG00000016372
ENSG00000115694
Serine/threonine kinase 25
Low tissue specificity
Detected in all
STK26
ENSSSCG00000021205
ENSG00000134602
Serine/threonine-protein kinase 26
Tissue enhanced
Detected in all
cartilage:
31.0
lymphoid tissue:
31.8
STK3
ENSSSCG00000006074
ENSG00000104375
Serine/threonine kinase 3
Low tissue specificity
Detected in all
STK31
ENSSSCG00000016719
ENSG00000196335
Serine/threonine kinase 31
Tissue enhanced
Detected in many
testis:
30.1
STK33
ENSSSCG00000030206
ENSG00000130413
Serine/threonine kinase 33
Tissue enhanced
Detected in many
fallopian tube:
24.9
testis:
60.3
STK35
ENSSSCG00000007179
ENSG00000125834
Serine/threonine kinase 35
Tissue enhanced
Detected in all
cornea:
97.0
lens:
36.3
STK36
ENSSSCG00000026964
ENSG00000163482
Serine/threonine kinase 36
Tissue enriched
Detected in all
testis:
65.2
STK38
ENSSSCG00000001563
ENSG00000112079
Serine/threonine kinase 38
Low tissue specificity
Detected in all
STK38L
ENSSSCG00000022288
ENSG00000211455
Serine/threonine kinase 38 like
Low tissue specificity
Detected in all
STK39
ENSSSCG00000022496
ENSG00000198648
Serine/threonine kinase 39
Tissue enhanced
Detected in many
choroid plexus:
76.5
lens:
59.8
salivary gland:
59.5
STK4
ENSSSCG00000030820
ENSG00000101109
Serine/threonine kinase 4
Tissue enhanced
Detected in all
lymphoid tissue:
53.1
STK40
ENSSSCG00000036832
ENSG00000196182
Serine/threonine kinase 40
Tissue enhanced
Detected in all
lens:
71.4
STKLD1
ENSSSCG00000031407
ENSG00000198870
Serine/threonine kinase like domain containing 1
Tissue enriched
Detected in many
testis:
35.6
STMN1
ENSSSCG00000026257
ENSG00000117632
Stathmin
Tissue enhanced
Detected in all
brain:
111.8
lymphoid tissue:
71.7
STMN3
ENSSSCG00000038405
ENSG00000197457
Stathmin 3
Tissue enhanced
Detected in all
brain:
30.7
STN1
ENSSSCG00000010605
ENSG00000107960
CST complex subunit STN1
Low tissue specificity
Detected in all
STOM
ENSSSCG00000036639
ENSG00000148175
Stomatin
Low tissue specificity
Detected in all
STOML1
ENSSSCG00000001913
ENSG00000067221
Stomatin like 1
Tissue enriched
Detected in all
epididymis:
44.6
STOML2
ENSSSCG00000039782
ENSG00000165283
Stomatin like 2
Low tissue specificity
Detected in all
STOML3
ENSSSCG00000009366
ENSG00000133115
Stomatin like 3
Tissue enhanced
Detected in all
fallopian tube:
39.0
STON2
ENSSSCG00000002412
ENSG00000140022
Stonin 2
Low tissue specificity
Detected in all
STOX1
ENSSSCG00000010245
ENSG00000165730
Storkhead box 1
Tissue enhanced
Detected in many
heart:
23.7
pituitary gland:
24.1
STOX2
ENSSSCG00000015780
ENSG00000173320
Storkhead box 2
Low tissue specificity
Detected in all
STPG1
ENSSSCG00000003541
ENSG00000001460
Sperm tail PG-rich repeat containing 1
Tissue enriched
Detected in many
testis:
73.2
STPG2
ENSSSCG00000009188
ENSG00000163116
Sperm tail PG-rich repeat containing 2
Low tissue specificity
Detected in all
STRA6
ENSSSCG00000001909
ENSG00000137868
Stimulated by retinoic acid 6
Tissue enhanced
Detected in many
kidney:
79.5
lens:
35.1
STRA8
ENSSSCG00000016533
ENSG00000146857
Stimulated by retinoic acid gene 8 protein homolog
Group enriched
Detected in some
epididymis:
19.3
testis:
19.1
STRADA
ENSSSCG00000017290
ENSG00000266173
STE20-related kinase adaptor alpha
Tissue enhanced
Detected in all
testis:
59.2
STRADB
ENSSSCG00000031271
ENSG00000082146
STE20-related kinase adaptor beta
Tissue enhanced
Detected in all
heart:
62.5
skeletal muscle:
62.5
STRAP
ENSSSCG00000021410
ENSG00000023734
Serine/threonine kinase receptor associated protein
Low tissue specificity
Detected in all
STRBP
ENSSSCG00000005582
ENSG00000165209
Spermatid perinuclear RNA binding protein
Low tissue specificity
Detected in all
STRIP1
ENSSSCG00000006813
ENSG00000143093
Striatin interacting protein 1
Low tissue specificity
Detected in all
STRIP2
ENSSSCG00000016567
ENSG00000128578
Striatin interacting protein 2
Tissue enhanced
Detected in many
brain:
52.9
pineal gland:
26.5
STRN
ENSSSCG00000008499
ENSG00000115808
Striatin
Tissue enhanced
Detected in all
brain:
69.8
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