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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SPATA6L
ENSSSCG00000005221
ENSG00000106686
Spermatogenesis associated 6 like
Tissue enhanced
Detected in all
testis:
69.1
SPATA7
ENSSSCG00000002424
ENSG00000042317
Spermatogenesis-associated protein 7
Tissue enriched
Detected in all
testis:
114.1
SPATS1
ENSSSCG00000039903
ENSG00000249481
Spermatogenesis associated serine rich 1
Tissue enhanced
Detected in some
choroid plexus:
18.6
fallopian tube:
17.4
upper respiratory system:
18.2
SPATS2L
ENSSSCG00000016090
ENSG00000196141
SPATS2-like protein
Tissue enhanced
Detected in all
thyroid gland:
99.1
SPC25
ENSSSCG00000015924
ENSG00000152253
SPC25, NDC80 kinetochore complex component
Low tissue specificity
Detected in all
SPCS1
ENSSSCG00000011447
ENSG00000114902
Signal peptidase complex subunit 1
Tissue enhanced
Detected in all
testis:
75.9
SPCS3
ENSSSCG00000015769
ENSG00000129128
Signal peptidase complex subunit 3
Low tissue specificity
Detected in all
SPDL1
ENSSSCG00000025965
ENSG00000040275
Spindle apparatus coiled-coil protein 1
Tissue enhanced
Detected in many
testis:
15.5
SPDYA
ENSSSCG00000008538
ENSG00000163806
Speedy protein A
Tissue enriched
Detected in all
testis:
52.2
SPEN
ENSSSCG00000034484
ENSG00000065526
Spen family transcriptional repressor
Low tissue specificity
Detected in all
SPG11
ENSSSCG00000004684
ENSG00000104133
SPG11, spatacsin vesicle trafficking associated
Low tissue specificity
Detected in all
SPG21
ENSSSCG00000004544
ENSG00000090487
Maspardin
Tissue enhanced
Detected in all
male glands:
64.5
SPG7
ENSSSCG00000024756
ENSG00000197912
SPG7, paraplegin matrix AAA peptidase subunit
Low tissue specificity
Detected in all
SPHK1
ENSSSCG00000017178
ENSG00000176170
Sphingosine kinase 1
Tissue enhanced
Detected in many
epididymis:
41.9
lens:
21.1
SPHK2
ENSSSCG00000030425
ENSG00000063176
Sphingosine kinase 2
Low tissue specificity
Detected in all
SPHKAP
ENSSSCG00000016256
ENSG00000153820
SPHK1 interactor, AKAP domain containing
Group enriched
Detected in many
brain:
54.8
fallopian tube:
17.6
small intestine:
20.9
SPICE1
ENSSSCG00000024663
ENSG00000163611
Spindle and centriole associated protein 1
Low tissue specificity
Detected in all
SPIDR
ENSSSCG00000006277
ENSG00000164808
Scaffolding protein involved in DNA repair
Low tissue specificity
Detected in all
SPIN1
ENSSSCG00000035901
ENSG00000106723
Spindlin-1
Low tissue specificity
Detected in all
SPIN3
ENSSSCG00000032692
ENSG00000204271
Spindlin family member 3
Low tissue specificity
Detected in all
SPIN4
ENSSSCG00000036647
ENSG00000186767
Spindlin family member 4
Tissue enhanced
Detected in many
brain:
7.4
SPINDOC
ENSSSCG00000013048
ENSG00000168005
Spindlin interactor and repressor of chromatin binding
Low tissue specificity
Detected in all
SPINK7
ENSSSCG00000022035
ENSG00000145879
Serine peptidase inhibitor, Kazal type 7 (putative)
Tissue enhanced
Detected in many
male glands:
22.2
testis:
40.7
SPINK9
ENSSSCG00000014426
ENSG00000204909
Serine peptidase inhibitor, Kazal type 9
Tissue enhanced
Detected in many
male glands:
28.6
SPIRE1
ENSSSCG00000039769
ENSG00000134278
Spire type actin nucleation factor 1
Low tissue specificity
Detected in all
SPIRE2
ENSSSCG00000002635
ENSG00000204991
Spire type actin nucleation factor 2
Tissue enhanced
Detected in many
stomach:
42.1
SPNS1
ENSSSCG00000007809
ENSG00000169682
Protein spinster homolog 1
Low tissue specificity
Detected in all
SPNS2
ENSSSCG00000017879
ENSG00000183018
Sphingolipid transporter 2
Low tissue specificity
Detected in many
SPNS3
ENSSSCG00000017880
ENSG00000182557
Sphingolipid transporter 3 (putative)
Tissue enhanced
Detected in many
lymphoid tissue:
16.8
stomach:
9.3
SPOCK1
ENSSSCG00000032423
ENSG00000152377
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1
Group enriched
Detected in many
brain:
71.0
pineal gland:
53.0
SPON1
ENSSSCG00000013393
ENSG00000262655
Spondin 1
Tissue enhanced
Detected in all
ovary:
52.6
SPON2
ENSSSCG00000039488
ENSG00000159674
Spondin 2
Tissue enhanced
Detected in many
cartilage:
86.5
SPOP
ENSSSCG00000020796
ENSG00000121067
Speckle type BTB/POZ protein
Low tissue specificity
Detected in all
SPOPL
ENSSSCG00000032198
ENSG00000144228
Speckle type BTB/POZ protein like
Low tissue specificity
Detected in all
SPOUT1
ENSSSCG00000005662
ENSG00000198917
SPOUT domain containing methyltransferase 1
Low tissue specificity
Detected in all
SPP1
ENSSSCG00000009216
ENSG00000118785
Osteopontin
Tissue enhanced
Detected in many
gallbladder:
209.5
SPPL2A
ENSSSCG00000004635
ENSG00000138600
Signal peptide peptidase like 2A
Low tissue specificity
Detected in all
SPPL2B
ENSSSCG00000013464
ENSG00000005206
Signal peptide peptidase like 2B
Low tissue specificity
Detected in all
SPPL3
ENSSSCG00000009917
ENSG00000157837
Signal peptide peptidase like 3
Low tissue specificity
Detected in all
SPRED1
ENSSSCG00000039393
ENSG00000166068
Sprouty related EVH1 domain containing 1
Low tissue specificity
Detected in all
SPRED2
ENSSSCG00000008357
ENSG00000198369
Sprouty related EVH1 domain containing 2
Low tissue specificity
Detected in all
SPRTN
ENSSSCG00000040087
ENSG00000010072
SprT-like domain-containing protein Spartan
Low tissue specificity
Detected in all
SPRY1
ENSSSCG00000009083
ENSG00000164056
Protein sprouty homolog 1
Low tissue specificity
Detected in all
SPRY2
ENSSSCG00000009482
ENSG00000136158
Sprouty RTK signaling antagonist 2
Low tissue specificity
Detected in all
SPRYD3
ENSSSCG00000000262
ENSG00000167778
SPRY domain-containing protein 3
Low tissue specificity
Detected in all
SPRYD4
ENSSSCG00000028066
ENSG00000176422
SPRY domain containing 4
Low tissue specificity
Detected in all
SPRYD7
ENSSSCG00000009390
ENSG00000123178
SPRY domain-containing protein 7
Low tissue specificity
Detected in all
SPSB1
ENSSSCG00000035940
ENSG00000171621
SplA/ryanodine receptor domain and SOCS box containing 1
Tissue enhanced
Detected in many
cartilage:
51.5
SPSB2
ENSSSCG00000025460
ENSG00000111671
SPRY domain-containing SOCS box protein 2
Tissue enhanced
Detected in all
male glands:
30.4
SPSB3
ENSSSCG00000039024
ENSG00000162032
SplA/ryanodine receptor domain and SOCS box containing 3
Low tissue specificity
Detected in all
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